Locus 7260

Sequence ID 2L_DroMel_CAF1
Location 20,333,548 – 20,333,668
Length 120
Max. P 0.926790
window11619

overview

Window 9

Location 20,333,548 – 20,333,668
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 90.11
Mean single sequence MFE -42.40
Consensus MFE -36.08
Energy contribution -36.03
Covariance contribution -0.05
Combinations/Pair 1.22
Mean z-score -2.32
Structure conservation index 0.85
SVM decision value 1.18
SVM RNA-class probability 0.926790
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20333548 120 + 22407834
UUCAACAUCCUCGCUUGGGCCAUGGAACAAGUCCUUCAUGGACAAACAGACGUGGAUGGAACGGGGUGACGAUCGGCUGUCCGUAACGCUGGCGGAGAUCGUUCACAUCCGUUCCGUCAU
......((((.((..((.((((((((........))))))).)...))..)).))))(((((((((((((((((..(((((.(.....).))))).))))).)))).))))))))..... ( -49.80)
>DroVir_CAF1 63668 120 + 1
UUCAACAUCCUCGCUUGGCCCAUGGAACAAGUCCUUUAUGGACAAACAGACCUGGAUGGAACGUGGUGAUGAUCGGCUGUCUGUCACGCUGGCUGAGAUCGUUCACAUACGUUCCGUCAU
((((....((......))....))))....((((.....))))...........((((((((((((((((((((..(.(((.(.....).))).).))))).)))).))))))))))).. ( -38.90)
>DroGri_CAF1 55012 120 + 1
UUCAACAUCCUCGCUUGGCCCAUGGAACAAGUCCUUUAUGGACAAACAGACCUGGAUGGAACGUGGUGAUGAUCGUCUGUCUGUCACACUGGCGGAGAUCGUCCACAUACGUUCCGUCAU
((((....((......))....))))....((((.....))))...........((((((((((((((((((((.((((((.(.....).)))))))))))).))).))))))))))).. ( -43.60)
>DroWil_CAF1 63957 120 + 1
UUCAACAUCCUCCCUGGGCCCAUGGAAUAAAUCCUUUAUGGACAAACAAACGUGGAUGGAACGUGGUGAUGAUCGUCUCUCAGUGACAUUGGAGGAAAUUGUGCACAUACGUUCUGUCAU
.....((((((((.((....)).))).....(((.....)))...........)))))(((((((((((..((..((((.((((...))))))))..))..).))).)))))))...... ( -33.50)
>DroMoj_CAF1 65570 120 + 1
UUCAACAUCCUCGCUUGGCCCAUGGAACAAGUCCUUUAUGGACAAACAGACCUGGAUGGAACGUGGGGAUGAUCGUCUGUCCGUUACGCUAGCGGAGAUCGUUCACAUACGUUCCGUCAU
((((....((......))....))))....((((.....))))...........(((((((((((.((((((((.....(((((((...)))))))))))))))...))))))))))).. ( -41.70)
>DroAna_CAF1 45933 120 + 1
UUCAACAUCCUCCCUUGGCCCAUGGAACAAGUCCUUCAUGGAUAAACAGACCUGGAUGGAACGGGGGGACGAUCGCCUGUCCGUCACACUGGCGGAGAUCGUUCACAUCCGUUCCGUCAU
........((......)).(((((((........))))))).............(((((((((((.((((((((.....((((((.....))))))))))))))...))))))))))).. ( -46.90)
>consensus
UUCAACAUCCUCGCUUGGCCCAUGGAACAAGUCCUUUAUGGACAAACAGACCUGGAUGGAACGUGGUGAUGAUCGUCUGUCCGUCACACUGGCGGAGAUCGUUCACAUACGUUCCGUCAU
..............(((..(((((((........))))))).))).........((((((((((((((((((((.....((((((.....)))))))))))).))).))))))))))).. (-36.08 = -36.03 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:44 2006