Locus 7259

Sequence ID 2L_DroMel_CAF1
Location 20,329,267 – 20,329,363
Length 96
Max. P 0.907359
window11618

overview

Window 8

Location 20,329,267 – 20,329,363
Length 96
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 87.89
Mean single sequence MFE -22.02
Consensus MFE -16.47
Energy contribution -17.00
Covariance contribution 0.53
Combinations/Pair 1.18
Mean z-score -3.86
Structure conservation index 0.75
SVM decision value 1.05
SVM RNA-class probability 0.907359
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20329267 96 + 22407834
ACGUCAUCACCUCAACGGUGACGUAUAAAUCACCCACGCAACAACAACAGCGACG-ACGGCCAAACAACUUUUAGGCCGUUAAAUGUCAAAACAAAA
((((((((........))))))))............(((..........)))..(-((((((............)))))))................ ( -23.90)
>DroSec_CAF1 76232 96 + 1
ACGUCAUCACCCCAACGGUGACGUAUAAAUCACCCACGCAACAACAACAGCGACG-ACGGCCAAACAGCUUUUAGGCCGUUAAAUGUCAAAACAAAA
((((((((........))))))))............(((..........)))..(-((((((............)))))))................ ( -23.90)
>DroSim_CAF1 72264 96 + 1
ACGUCAUCACCCCAACGGUGACGUAUAAAUCACCCACGCAACAACAACAGCGACG-ACGGCCAAACAACUUUUAGGCCGUUAAAUGUCAAAACAAAA
((((((((........))))))))............(((..........)))..(-((((((............)))))))................ ( -23.90)
>DroEre_CAF1 58998 96 + 1
ACGUCAUCACCUCAACGGUGACGUAUAAAUCACCCACGCAGCAACAACACCACCG-ACGGCCAAACCACUUUUAGGCCGUUAAAUGUCAAAACAAAA
((((((((........))))))))..............................(-((((((............)))))))................ ( -21.50)
>DroYak_CAF1 52307 95 + 1
ACGUCAUCACCUCAACGGUGACGUAUAAAUCACCCACGCAACAACAAUAGCGACA-ACGGC-AAACCACUUUUAGGCCGUUAAAUGUGAAAACAAAA
((((((((........)))))))).....((((...(((..........)))..(-(((((-.............))))))....))))........ ( -23.52)
>DroAna_CAF1 41556 93 + 1
ACGUCACCACUUCAGGAGUGACGUAUAAAUCACUAAAGCAACAAUAACAACAACAAACCACCAAACA----UUUGUGUGUUAAAUGUCAAAACAAAG
(((((((..(....)..)))))))....................(((((...(((((..........----))))).)))))............... ( -15.40)
>consensus
ACGUCAUCACCUCAACGGUGACGUAUAAAUCACCCACGCAACAACAACAGCGACG_ACGGCCAAACAACUUUUAGGCCGUUAAAUGUCAAAACAAAA
((((((((........)))))))).........................(((....((((((............))))))....))).......... (-16.47 = -17.00 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:43 2006