Locus 7257

Sequence ID 2L_DroMel_CAF1
Location 20,316,399 – 20,316,505
Length 106
Max. P 0.984333
window11616

overview

Window 6

Location 20,316,399 – 20,316,505
Length 106
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 90.79
Mean single sequence MFE -28.44
Consensus MFE -22.88
Energy contribution -23.36
Covariance contribution 0.48
Combinations/Pair 1.11
Mean z-score -2.38
Structure conservation index 0.80
SVM decision value 1.97
SVM RNA-class probability 0.984333
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20316399 106 + 22407834
UUUUUCGUGUUUUAUGUCGCAGAUAAUGGCAAUAUUAUAAAGAUGUUAAGCCCGUUUUUAUGACCGAUUUUAGUCGUAUAUU-UUCGCGACGUGUUCGCGGUCGUUU
....(((((...((((((((.((.((((......(((((((((((.......))))))))))).((((....))))..))))-.))))))))))..)))))...... ( -27.90)
>DroSec_CAF1 63447 106 + 1
UUUUUCGUGUUUUAUGUCGCAGAUAAUGGCAAUAUUAUAAAGAUGUUAAGCCCGUUUUUAUGACCGAUUUUGGCCGUAUAUU-UUCGCGACGUGUUCGCGGUCGUUU
....(((((...(((((((((((((((((((((.(((((((((((.......)))))))))))...)))...))))).))))-)..))))))))..)))))...... ( -29.90)
>DroSim_CAF1 57903 106 + 1
UUUUUCGUGUUUUAUGUCGCAGAUAAUGGCAAUAUUAUAAAGAUGUUAAGCCCGUUUUUAUGACCGAUUUUGGCCGUAUAUU-UUCGCGACGUGUUCGCGGUCGUUU
....(((((...(((((((((((((((((((((.(((((((((((.......)))))))))))...)))...))))).))))-)..))))))))..)))))...... ( -29.90)
>DroEre_CAF1 45911 107 + 1
UUUUUCAUGUCUCAUGUCGCAGAUAAUAGCAAUAUUAUAAAGAUGUUAGGCCCGUUUUCAUGACCGAUUGUGGCCGUAAAUUUUUUGCGACGUGUUCGUGGUCUUUU
....(((((...(((((((((.((((((....))))))((((((....((((((...((......)).)).))))....)))))))))))))))..)))))...... ( -32.90)
>DroYak_CAF1 39348 105 + 1
UGUUUCAUAUUUUAUGUCGUAGAUAAUGGCAAUAUUAUAAAGAUGUUAGGCCCGUUUU-AUGACCGAUUGCGAGCGUAUAUU-UUUGCGACGUGUUCGUGCUCUUUU
...............((((((((....(((.(((((.....)))))...)))...)))-))))).......(((((((....-..))).(((....))))))).... ( -21.60)
>consensus
UUUUUCGUGUUUUAUGUCGCAGAUAAUGGCAAUAUUAUAAAGAUGUUAAGCCCGUUUUUAUGACCGAUUUUGGCCGUAUAUU_UUCGCGACGUGUUCGCGGUCGUUU
.....((((...((((((((.((((((((((((.(((((((((((.......)))))))))))...)))...))))).))))....))))))))..))))....... (-22.88 = -23.36 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:41 2006