| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,316,208 – 20,316,314 |
| Length | 106 |
| Max. P | 0.541034 |
| Location | 20,316,208 – 20,316,314 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 77.21 |
| Mean single sequence MFE | -27.33 |
| Consensus MFE | -16.07 |
| Energy contribution | -16.65 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.541034 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20316208 106 + 22407834 CACACUUGCAAUUUAGUGGCAUUAGGGGUGUAGUGGUUGCCA--UAACCGCUGCACAGGGAGAAAUAA--AUUGCAUUCACGUUCAGA-UAUGUUUUAUGCACUGAAAAGG ......(((((((((......((....((((((((((((...--))))))))))))...))....)))--))))))......(((((.-..(((.....)))))))).... ( -29.50) >DroSec_CAF1 63246 106 + 1 CACACUUGCAAUUUAGUGGCAUUAGGGGUGUAGUGGUUGCCA--UAACCGCUGCACAGGGAGAAAUAA--AUUGAACUUAAGAUCAGA-UAUGUUUUAUGCACUGAAAAGG ...........(((((((.(((.....((((((((((((...--)))))))))))).....((((((.--.((((.(....).)))).-..)))))))))))))))).... ( -27.30) >DroSim_CAF1 57702 106 + 1 CACACUUGCAAUUUAGUGGCAUUAGGGGUGUAGUGGUUGCCA--UAACCGCUGCACAGGGAGAAAUAA--AUUGAACUUACGAUCAGA-UAUGUUUUAUGCACUGAAAAGG ...........(((((((.(((.....((((((((((((...--)))))))))))).....((((((.--.((((........)))).-..)))))))))))))))).... ( -27.00) >DroEre_CAF1 45650 106 + 1 CACACUUGCAAUUUAGUGGCAUUAGGGGUGUAGUGGUUGCCG--UAACCGCUACACUGGGAGAAAUAA--AUGCAGCUUAAGAGCAGA-UGUGUUGUAAAUAUUGAAACUA ((((.((((..((.(((.(((((...(((((((((((((...--)))))))))))))...(....).)--)))).))).))..)))).-)))).................. ( -32.40) >DroYak_CAF1 39142 106 + 1 CACACUUGCAAUUUUGUGGCAUUAGGGGUGUAGUGGUUGCCA--UGACCGCUACACAGGGCGAAAUGA--AUUAAACUUAAGAGCACA-UAUAUUAUAUAUAUUAAAACUG ..............((((((.(((((.(((((((((((....--.)))))))))))............--......)))))..)).))-)).................... ( -22.51) >DroAna_CAF1 27796 110 + 1 CACACUUGCAAUUUUGUGGCAUUAAAAUUGUGGAAGUUGCAAGCUGCGAGCUGCACAAGGAAAAUUGUUGCUACAAUUUGGAGGAAGAAUGAAAAGUACA-CUUGAAUUUU ....(((.(((..((((((((.(((..(((((..((((((.....)).)))).)))))......))).)))))))).))).))).(((((...(((....-)))..))))) ( -25.30) >consensus CACACUUGCAAUUUAGUGGCAUUAGGGGUGUAGUGGUUGCCA__UAACCGCUGCACAGGGAGAAAUAA__AUUGAACUUAAGAGCAGA_UAUGUUUUAUACACUGAAAAGG ..((((........)))).........((((((((((((.....))))))))))))....................................................... (-16.07 = -16.65 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:40 2006