| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,315,949 – 20,316,046 |
| Length | 97 |
| Max. P | 0.963065 |
| Location | 20,315,949 – 20,316,046 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 78.20 |
| Mean single sequence MFE | -24.00 |
| Consensus MFE | -10.74 |
| Energy contribution | -11.13 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.45 |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.963065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20315949 97 + 22407834 ACUUGGGAGAGUAACAGUUACUUUUCCAACAUACAUACAUAUAUAAACGGAUAUGUACGUGCGGCAUAUACGUAUAUACCUGUAUCUAUCUAAUUU-U ..(((((((((((.....))))))))))).(((.(((((..((((.(((.((((((.......)))))).))).))))..))))).))).......-. ( -24.80) >DroPse_CAF1 29900 78 + 1 GCUUGGGAGAGUAACAGUUACUUUUCCU----------AUAUAUAUACCGA-ACGUACGAGUG-CGAGUGC--------GAGUAUAUAUCUAAUUUUU ....(((((((((.....)))))))))(----------(.((((((((((.-.((((....))-))....)--------).)))))))).))...... ( -20.70) >DroSim_CAF1 57447 93 + 1 ACUUGAGAGAGUAACAGUUACUUUUCCAACUUA----CAUAUAUACACGGAUAUGUACGUGCGGCGUAUACGUAUAUACCUGUAUCUAUCUAAUUU-U ..(((..((((((.....))))))..))).(((----.(((.(((((.((.((((((((((.......))))))))))))))))).))).)))...-. ( -22.50) >DroEre_CAF1 45394 90 + 1 GCUUGGGAGAGUAACAGUUACUUUUCCAGC--------AUAUAUACACGGAUAUGUACGUGGGGCCUAUACGUAUAUAUAUGUAUCUAUCUAAUUUUU (((.(((((((((.....))))))))))))--------(((.(((((...(((((((((((.......))))))))))).))))).)))......... ( -28.10) >DroYak_CAF1 38885 90 + 1 GCUUGGGAGAGUAACAGUUACUUUUUCAAC--------AUAUAUACACGGAUAUGUACGUGCAGCGUAUAAGUAUAUAUAUGUAUCUAUCUAAUUUUU ...((..((((((.....))))))..))((--------(((((((.((..((((((.......))))))..)).)))))))))............... ( -23.10) >DroPer_CAF1 29646 84 + 1 GCUUGGGAGAGUAACAGUUACUUUUCCU----------AUAUAUACACCGA-ACGUACGAGUG-CGAGUGCGA--GCGCGAGUAUAUAUCUAAUUUUU ....(((((((((.....))))))))).----------((((((((.(((.-.(((((.....-...))))).--.)).).))))))))......... ( -24.80) >consensus GCUUGGGAGAGUAACAGUUACUUUUCCAAC________AUAUAUACACGGAUAUGUACGUGCGGCGUAUACGUAUAUACAUGUAUCUAUCUAAUUUUU ....(((((((((.....)))))))))......................((((.((((.......................)))).))))........ (-10.74 = -11.13 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:39 2006