Locus 7254

Sequence ID 2L_DroMel_CAF1
Location 20,315,360 – 20,315,456
Length 96
Max. P 0.809562
window11613

overview

Window 3

Location 20,315,360 – 20,315,456
Length 96
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 79.15
Mean single sequence MFE -21.86
Consensus MFE -15.11
Energy contribution -16.50
Covariance contribution 1.39
Combinations/Pair 1.10
Mean z-score -1.57
Structure conservation index 0.69
SVM decision value 0.64
SVM RNA-class probability 0.809562
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20315360 96 + 22407834
GGACG-AAACCCAACCCAUUGAAACCCAUUUCUGGGGCUGCCAGUUCGUGGCACAUGGACGUGAUAAAGGACUCAUUAAAACAUCACUUCAAUGGGC
((...-....))..(((((((((.((((....)))).......(((((((...)))))))(((((.................)))))))))))))). ( -26.83)
>DroPse_CAF1 29240 80 + 1
CUA-------CCAUCCCAUUUCAACCAGA----------GCCCAGCCAUGCCACAUGGACAUGAUAAAGGACUCAUUAAAACAUCACUUCAAUGGGC
...-------....((((((.......((----------(((....((((((....)).)))).....)).)))................)))))). ( -13.00)
>DroEre_CAF1 44799 96 + 1
GGACG-AAACCCAACCCAUUGAAACCCAUUUCUGGGGCUGCCAGUUCGUGGCACAUGGACGUGAUAAAGGACUCAUUAAAACAUCACUUCAAUGGGC
((...-....))..(((((((((.((((....)))).......(((((((...)))))))(((((.................)))))))))))))). ( -26.83)
>DroYak_CAF1 38329 96 + 1
GGACG-AAACUCAACCCAUUGAAGCCCAUUCCUGGGGCUGCCAGUUCGUGGCACAUGGACGUGAUAAAGGACUCAUUAAAACAUCACUUCAAUGGGC
.....-........(((((((((((((.......)))))....(((((((...)))))))(((((.................))))).)))))))). ( -28.33)
>DroAna_CAF1 27026 97 + 1
AACCAAAAACCCAACCCAUUGAAAUCCAUUUCUUGGCCUGGCAGUUCGUGGCACAUGGACGUGAUAAAGGACUCAUUAAAACAUCACCUCAAUGGGC
..............((((((((...(((.....)))(((..(((((((((...))))))).))....)))..................)))))))). ( -23.10)
>DroPer_CAF1 29050 80 + 1
CUA-------CCAUCCCAUUUCAACCCGA----------GCCCAGCCAUGCCACAUGGACAUGAUAAAGGACUCAUUAAAACAUCACUUCAAUGGGC
...-------....((((((.......((----------(((....((((((....)).)))).....)).)))((......))......)))))). ( -13.10)
>consensus
GGACG_AAACCCAACCCAUUGAAACCCAUUUCUGGGGCUGCCAGUUCGUGGCACAUGGACGUGAUAAAGGACUCAUUAAAACAUCACUUCAAUGGGC
..............(((((((((....................(((((((...)))))))(((((.................)))))))))))))). (-15.11 = -16.50 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:38 2006