Locus 7252

Sequence ID 2L_DroMel_CAF1
Location 20,300,517 – 20,300,607
Length 90
Max. P 0.619646
window11610

overview

Window 0

Location 20,300,517 – 20,300,607
Length 90
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 85.16
Mean single sequence MFE -25.35
Consensus MFE -19.06
Energy contribution -18.57
Covariance contribution -0.49
Combinations/Pair 1.11
Mean z-score -1.91
Structure conservation index 0.75
SVM decision value 0.18
SVM RNA-class probability 0.619646
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20300517 90 + 22407834
UUUCCUAUUAUUUUU-UAUGAGUCUUCCUAAAGAUAUAU----AU----------AUAGUUUAUGUGUAUUUCGGCCCGUCAGAGGUCAGUUGGGUGUUGACUUC
...............-...(((((..(((((((((((((----((----------(.....))))))))))).(((((....).))))..)))))....))))). ( -21.70)
>DroSec_CAF1 43570 105 + 1
UUCCACAUUAUUUUUGUAUGGGUCUUCCUAAAGAUAUAUGUAUAUGUGUACCCACAUAGUUUAUGUGUAUUUCGGCCCGUCAGAGGUCAGUUGGGUGUUGACUUC
.((((.((((((((((.(((((((.........(((((((..((((((....))))))...))))))).....)))))))))))))).))))))).......... ( -27.04)
>DroSim_CAF1 42401 100 + 1
UUCCACAUUAUUUUUGUAUGGGUCUUCCCAAAGAUAUAU----AUGCG-ACUAGCAUAGUUGAUGUGUAUUUCGGCCCGUCAGAGGUCAGUUGGGUGUUGACUUC
..(((.((.......)).)))(((..(((((((((((((----((.((-((((...)))))))))))))))).(((((....).))))..)))))....)))... ( -27.30)
>consensus
UUCCACAUUAUUUUUGUAUGGGUCUUCCUAAAGAUAUAU____AUG_G_AC___CAUAGUUUAUGUGUAUUUCGGCCCGUCAGAGGUCAGUUGGGUGUUGACUUC
...................(((((..(((((((((((((....((((......)))).......)))))))).(((((....).))))..)))))....))))). (-19.06 = -18.57 +  -0.49)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:36 2006