Locus 7251

Sequence ID 2L_DroMel_CAF1
Location 20,298,454 – 20,298,563
Length 109
Max. P 0.575229
window11609

overview

Window 9

Location 20,298,454 – 20,298,563
Length 109
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 80.75
Mean single sequence MFE -22.49
Consensus MFE -14.17
Energy contribution -14.28
Covariance contribution 0.12
Combinations/Pair 1.14
Mean z-score -1.82
Structure conservation index 0.63
SVM decision value 0.08
SVM RNA-class probability 0.575229
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20298454 109 + 22407834
AGUAUAUCAUAACAAGAGACCAUUCACUUUUUUCGUUUUGAAGCAACAAAUUUGAAAAGAGAAAACUUUAUGUUUUUCCCGCGGGCUUGUUUGUUUUUUUUUUCUCGCU
.......((.((((((...((.....(((((((((.((((......))))..)))))))))(((((.....)))))......)).))))))))................ ( -18.60)
>DroSec_CAF1 41550 104 + 1
AGAACAACAAGACAAGAGAUAAUUCUCUUUUUUUG-UUUGAAGUAAACAUUUUUAAAAGAGAA-ACUUCUUGUUUUUCUCGCGCUAUUGCUUGUUUUUUUU---GCGCG
((((.(((((((.((((((....))))))(((((.-(((((((.......))))))).)))))-...))))))).))))(((((.................---))))) ( -25.13)
>DroSim_CAF1 40412 103 + 1
AGAACAACUAGACAAGAGAUAAUUCUCUUU-UUUG-UUUGAAGUAAACAUUUUUAAAAGAGAA-ACUUCUUGUUUUCCUCGCGCUAUUGCUUGUUUUUUUU---GCGCG
.........(((((((((....((((((((-(.((-((((...)))))).....)))))))))-..)))))))))....(((((.................---))))) ( -23.73)
>consensus
AGAACAACAAGACAAGAGAUAAUUCUCUUUUUUUG_UUUGAAGUAAACAUUUUUAAAAGAGAA_ACUUCUUGUUUUUCUCGCGCUAUUGCUUGUUUUUUUU___GCGCG
..........((((((((....(((((((((.......................)))))))))...))))))))......((((....................)))). (-14.17 = -14.28 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:35 2006