Locus 7250

Sequence ID 2L_DroMel_CAF1
Location 20,285,758 – 20,285,852
Length 94
Max. P 0.825386
window11608

overview

Window 8

Location 20,285,758 – 20,285,852
Length 94
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 80.93
Mean single sequence MFE -19.22
Consensus MFE -13.10
Energy contribution -13.60
Covariance contribution 0.50
Combinations/Pair 1.08
Mean z-score -1.99
Structure conservation index 0.68
SVM decision value 0.70
SVM RNA-class probability 0.825386
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20285758 94 + 22407834
-AUCUCAUUUCGGCUGUGCGCUAAUAAAAAUUAAGCGCCAGCCCAUAAACGUGGUACGAAAUUCUGUA-AAAUAAGCAAGAGGAAAGGCCCACACA----------------
-..........(((((.((((((((....))).)))))))))).......((((..(....((((((.-......)).))))....)..))))...---------------- ( -27.30)
>DroSec_CAF1 36466 94 + 1
-AUCUCAUUUCGGUUGUGCGCUAAUAAAAAUUAAGCGCCAACCAAUAAACGUUGUACGAAAUUCUGUA-AAAUAAGCUAGAGGAAAGGCCCACACA----------------
-.((((.....(((((.((((((((....))).)))))))))).......(((.((((......))))-.....)))..)))).............---------------- ( -21.00)
>DroSim_CAF1 35329 94 + 1
-AUCUCAUUUCGGUUGUGCGCUAAUAAAAAUUAAGCGCCAACCAAUAAACGUUGUACGAAAUUCUGUA-AAAUAAGCUAGAGGAAAGGCCCACACA----------------
-.((((.....(((((.((((((((....))).)))))))))).......(((.((((......))))-.....)))..)))).............---------------- ( -21.00)
>DroYak_CAF1 16884 95 + 1
-AUCGCGUAUUGGUUGCGCGCUAAUAAAAAUAAAGCACCAUCCCAUAAACGUUGCACAAAAUUCUAAAAAAAUAAAUAAGAGGAAAGGCCCACACA----------------
-..((((((.....))))))..............(((.(...........).)))..........................((......)).....---------------- ( -10.20)
>DroAna_CAF1 4529 95 + 1
AAUUUUAUUUCGAUUGCGCGCUAAUAAAAAUUAAGCGCCAACCAAUAAAAGUUGUAGACAAUUCUGUA-AAAUAAAUAAGUGGAAAAGCCCACACA----------------
.(((((((...((((((((((((((....))).)))))((((........))))..).)))))..)))-))))......((((......))))...---------------- ( -20.20)
>DroPer_CAF1 4675 108 + 1
-AACUCAUUUCGGUUGCGCGCUAAUAAAAAUUAAGCGCCAUCCAAUAAAAAGCGUAGACAAUUCUGUA--AAUAAAUAAGAGGAAAG-CCCACACACCACACCACCUAGACA
-..(((.....((.((.((((((((....))).))))))).))...........((((....))))..--.........))).....-........................ ( -15.60)
>consensus
_AUCUCAUUUCGGUUGCGCGCUAAUAAAAAUUAAGCGCCAACCAAUAAACGUUGUACAAAAUUCUGUA_AAAUAAACAAGAGGAAAGGCCCACACA________________
...........(((((.(((((...........))))))))))......................................((......))..................... (-13.10 = -13.60 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:34 2006