| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,285,304 – 20,285,397 |
| Length | 93 |
| Max. P | 0.709097 |
| Location | 20,285,304 – 20,285,397 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 82.78 |
| Mean single sequence MFE | -35.97 |
| Consensus MFE | -26.10 |
| Energy contribution | -27.43 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.709097 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20285304 93 - 22407834 ----------UAGCUGUUUAGCU---GGCGCUGGUAAUCCUGGUCGCGGAAUGGCGACAACAAAUCAGCUCC-AUCGGUGUGCGAUCUUGCGGUUGCCCGGCCAUAA ----------.((((....))))---(((((((((.......(((((......))))).....))))))...-..(((...((((((....)))))))))))).... ( -32.10) >DroSec_CAF1 36013 97 - 1 C------CUUUAGCUGUUUAGCU---GGAGCUGGUAAUCCUGGUCGCGGAAUGGCGACAACAAAUCAGCUCC-AUCGGUGUGCGAUCUUGCGGUUGCCCGGCCAUAA .------....((((....))))---(((((((((.......(((((......))))).....)))))))))-...((((.((((((....)))))).).))).... ( -35.60) >DroSim_CAF1 34882 97 - 1 C------CUUUAGCUGUUUAGCU---GGAGCUGGUAAUCCUGGUCGCGGAAUGGCGACAACAAAUCAGCUCC-AUCGGUGUGCGAUCUUGCGGUUGCCCGGCCAUAA .------....((((....))))---(((((((((.......(((((......))))).....)))))))))-...((((.((((((....)))))).).))).... ( -35.60) >DroEre_CAF1 21135 90 - 1 C------CUUUGGCU-----------GGAGCUGGUAAUCUUGGUCGCGGAAUGGCGACAACAAAUCAGCUCCGAUCGGUGUGCGAUCUUGCGGUUGCCCGGCCAUAA .------...(((((-----------(((((((((.......(((((......))))).....))))))))))..(((...((((((....)))))))))))))... ( -37.80) >DroYak_CAF1 16357 102 - 1 CCAUCUCCUUUAGCUG--GAGCU---GGAGCUGGUAAUCUUGGUCGCGGAAUGGCGACAACAAAUCAGCUCCGAUCGGUGUGCGAUCUUGCGGUUGCCCGGCCAUAA ............((((--(.((.---(((((((((.......(((((......))))).....)))))))))(((((.....)))))........)))))))..... ( -39.60) >DroAna_CAF1 3951 90 - 1 U------CCUUAGUUACCAAUCUGUAGGAGCUGG-----------GGGAAAUGGCGGCAACAAAUCAGCGACGAUCGGUGUGCGAUCUUGCGGUUGCAGGGCCAUAA (------((((((((.((........))))))))-----------)))..(((((.(((((......((((.(((((.....))))))))).)))))...))))).. ( -35.10) >consensus C______CUUUAGCUGUUUAGCU___GGAGCUGGUAAUCCUGGUCGCGGAAUGGCGACAACAAAUCAGCUCC_AUCGGUGUGCGAUCUUGCGGUUGCCCGGCCAUAA ..........................(((((((((.......(((((......))))).....)))))))))....(((..((((((....))))))...))).... (-26.10 = -27.43 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:33 2006