Locus 7246

Sequence ID 2L_DroMel_CAF1
Location 20,279,634 – 20,279,736
Length 102
Max. P 0.755831
window11602

overview

Window 2

Location 20,279,634 – 20,279,736
Length 102
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.63
Mean single sequence MFE -31.22
Consensus MFE -17.44
Energy contribution -18.84
Covariance contribution 1.40
Combinations/Pair 1.14
Mean z-score -1.85
Structure conservation index 0.56
SVM decision value 0.49
SVM RNA-class probability 0.755831
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20279634 102 - 22407834
UGAGUUUGUACACAAGUG------------------UGUUUCCUAUUAUCUUGACUCCGUCUGUUGCGAGCGUAAGUCACCGCAUAUCCUUAUGCCUAGGACAUUAAUGUGCGUAACUCG
.(((((((((((..((((------------------....(((((......(((((.((.((......))))..)))))..(((((....))))).)))))))))..)))))).))))). ( -27.80)
>DroSec_CAF1 30394 94 - 1
--------------------------UGAGGGUAAAUCUUUCCUAUUAUCUUGACUGCGUCUGUUCCAAGCGUAAGUCACGGCAUAUCCUUAUGCCGAGGACAUUAAUGUGCGUAACUCG
--------------------------...((((.......((((.......((((((((.((......))))).)))))(((((((....)))))))))))(((....)))....)))). ( -26.70)
>DroSim_CAF1 29256 113 - 1
UGAGUUUGCACACAAUUGU-------UGAGGGUAAAUCGUUCCUAUUAUCUUGACUGCGUCUGUUCCAAGCGUAAGUCACGGCAUAUCCUUAUGCCGAGGACAUUAAUGUGCGUAACUCG
.(((((((((((....(((-------(.((((........)))).......((((((((.((......))))).)))))(((((((....)))))))..))))....)))))).))))). ( -38.70)
>DroEre_CAF1 15474 107 - 1
UUAU--------UAAUU---GCCAUCGGAGGGGGAAUCUCUCCUACUAUCUUGACUGCGUCUGUGCCAA-CGUAAGUCACGGCAUAUCCUU-UGCCGAGGACAUUAAUGUGCGUAACUCG
.(((--------((((.---.((...((((((.....))))))........(((((((((........)-))).)))))(((((.......-))))).))..)))))))........... ( -29.50)
>DroYak_CAF1 10711 120 - 1
UGAUUUUGUACAUAAUUGUGGCCAUCUGAGGGUGAAUCUCCCUUAUUAUCUUGACUGUAUCUGUUCCAAGCGCAAGUCACGGCAUAUCCUUAUGCCGAGGACAUUAAUGUGCGUAACUCG
.((.(((((((((....(((.((...((((((.......))))))......(((((....((......))....)))))(((((((....))))))).)).)))..))))))).)).)). ( -33.40)
>consensus
UGAGUUUG_ACACAAUUG________UGAGGGUAAAUCUUUCCUAUUAUCUUGACUGCGUCUGUUCCAAGCGUAAGUCACGGCAUAUCCUUAUGCCGAGGACAUUAAUGUGCGUAACUCG
...........................(((..........((((.......(((((((((.((...)).)))).)))))(((((((....)))))))))))(((....))).....))). (-17.44 = -18.84 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:29 2006