Locus 7244

Sequence ID 2L_DroMel_CAF1
Location 20,277,015 – 20,277,135
Length 120
Max. P 0.511310
window11599

overview

Window 9

Location 20,277,015 – 20,277,135
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -27.92
Consensus MFE -25.46
Energy contribution -25.42
Covariance contribution -0.04
Combinations/Pair 1.10
Mean z-score -1.12
Structure conservation index 0.91
SVM decision value -0.04
SVM RNA-class probability 0.511310
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20277015 120 + 22407834
UUUUGUGGAGGUGUUGAUAACCGCAAGGUAGUGCAAAUUCAACCGGAAAAUUUACAAUGCAGUCGAUGCAAUUAAACGAUAUUGCCAUUUCACUUUUAUCGACUUCUGCACGUUCAUCCU
....(((.(((.((((((((((....))).(.((((.(((.....))).........((((.....))))...........)))))..........))))))).))).)))......... ( -27.90)
>DroSec_CAF1 27894 120 + 1
UUUUGUGGAGGUGUUGAUAACCGCAAGGUAGUGCAAAUUCAACCGGAAAAUUUACAAUGCAGUCGAUGCAAUUAAACGAUAUUGCCAUUUCACUUUUAUCGACCUCUGCACGUUUAUCCU
....(((.(((.((((((((((....))).(.((((.(((.....))).........((((.....))))...........)))))..........))))))).))).)))......... ( -27.90)
>DroSim_CAF1 26757 120 + 1
UUUUGAGGAGGUGUUGAUAACCGCAAGGUAGUGCAAAUUCAACCGGAAAAUUUACAAUGCAGUCGAUGCAAUUAAACGAUAUUGCCAUUUCACUUUUAUCGACCUCUGCACGGUUAUCCU
.....(((((((.(((((.(((....))).)).))).....))).........((..(((((((((((((((........)))))............))))))...))))..))..)))) ( -27.00)
>DroEre_CAF1 12924 120 + 1
UUUUGUGGAGGUGUUGAUAACCGCAAGGUAGUGCAAAUUCAACCGGAAAAUAUACAAUGCAGUCGAUGCAAUUAAACGAUAUUGCCAUUUCACUUUUAUCGAUCGCCGCACCUUCAUCCU
....((((((((((((((.(((....))).)).)).......................((.(((((((((((........)))))............)))))).)).))))))))))... ( -29.50)
>DroYak_CAF1 8346 120 + 1
UUUUGUGGAGGUGUUGAUAACCGCAAGGUAAUGCAAAUUCAACCGGAAAAUUUACAAUGCAGUCGAUGCAAUUAAACGAUACUGCCAUUUCACUUUUAUCGAUCUCCGCACGUUUAUCCU
...(((((((((((((((.(((....)))..((((......................)))))))))))).......(((((...............)))))..))))))).......... ( -27.31)
>consensus
UUUUGUGGAGGUGUUGAUAACCGCAAGGUAGUGCAAAUUCAACCGGAAAAUUUACAAUGCAGUCGAUGCAAUUAAACGAUAUUGCCAUUUCACUUUUAUCGACCUCUGCACGUUUAUCCU
...(((((((((((((...(((....)))........(((.....)))......)))))).(((((((((((........)))))............))))))))))))).......... (-25.46 = -25.42 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:26 2006