Locus 7243

Sequence ID 2L_DroMel_CAF1
Location 20,276,855 – 20,276,975
Length 120
Max. P 0.664553
window11598

overview

Window 8

Location 20,276,855 – 20,276,975
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.80
Mean single sequence MFE -27.71
Consensus MFE -26.07
Energy contribution -26.14
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.64
Structure conservation index 0.94
SVM decision value 0.28
SVM RNA-class probability 0.664553
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20276855 120 + 22407834
CCCAACCACCCGCAAGCCCUCCAACGCUUCAUGCACUUCAUUAAAGCCACAUAAAUCAAGCCAAGCGGACGGAGGGGGAAAACAUAACAACAGCAGCCAUCCAUUGACAGGAAAGGUUGA
..(((((.(((....)((((((..(((((...((.........................)).)))))...)))))))).....................(((.......)))..))))). ( -28.01)
>DroSim_CAF1 26597 120 + 1
CCCAGCCACCCGCAAGCCCUCCAACGCUUCAUGCACUUCAUUAAAGCCACAUAAAUCAAGCCAAGCGGACGGAGGGGGAAAACAUAACAACAACAACCAUCCAUUGACAGGAAAGGUGGA
.....(((((......((((((..(((((...((.........................)).)))))...)))))).......................(((.......)))..))))). ( -28.01)
>DroEre_CAF1 12766 118 + 1
--CAACCACCCGCAAGCCCUCCAACGCUUCAUGCACUUCAUUAAAGCCACAUAAAUCAAGCCAAGCGGACGGAGGGGGAAAACAUAACAACAGCAGCCAUCCAUUGACAGGAAAGGUUGA
--...((...(....)((((((..(((((...((.........................)).)))))...))))))))...............(((((.(((.......)))..))))). ( -27.71)
>DroYak_CAF1 8188 118 + 1
--CAACAACCCGCAAGCCCUCCAACGCUUCAUGCACUUCAUUAAAGCCACAUAAAUCAAGCCAAGCGGACGGAGGGGGAAAACAUAACAACAGCAGCCAUCCAUUGACAGGAAAGGUUGA
--...(((((.((...((((((..(((((...((.........................)).)))))...))))))(.....).........)).....(((.......)))..))))). ( -27.11)
>consensus
__CAACCACCCGCAAGCCCUCCAACGCUUCAUGCACUUCAUUAAAGCCACAUAAAUCAAGCCAAGCGGACGGAGGGGGAAAACAUAACAACAGCAGCCAUCCAUUGACAGGAAAGGUUGA
........(((....)((((((..(((((...((.........................)).)))))...))))))))...............(((((.(((.......)))..))))). (-26.07 = -26.14 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:25 2006