Locus 7242

Sequence ID 2L_DroMel_CAF1
Location 20,276,551 – 20,276,671
Length 120
Max. P 0.713967
window11597

overview

Window 7

Location 20,276,551 – 20,276,671
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.83
Mean single sequence MFE -32.42
Consensus MFE -29.78
Energy contribution -30.14
Covariance contribution 0.36
Combinations/Pair 1.03
Mean z-score -1.26
Structure conservation index 0.92
SVM decision value 0.38
SVM RNA-class probability 0.713967
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20276551 120 - 22407834
GGGAAACGGGAAACUCGCAUCUGACCACCAUAUGACUGCAACUAACUGCUGUUGAACUCAACCUCAAACCUAAUAAAUAGCUUAAUUAGUCUGGUGUAUGUGCGAGUCGGUCCUGCGCUC
(((...(((((.((((((((.((..(((((...(((((((......))).((((....)))).........................))))))))))).))))))))...)))))..))) ( -33.40)
>DroSec_CAF1 27422 120 - 1
GGGAAACGGGAAACUCGCAUCUGACCACCAUAUGACUGCAACUAACUGCUGUUGAACUCAACCUCAAACCUAAUAAAUAGCUUAAUUAGUCUGGUGUAUGUGCGAGUGGGUCCUGCGCUC
(((...(((((.((((((((.((..(((((...(((((((......))).((((....)))).........................))))))))))).))))))))...)))))..))) ( -34.50)
>DroSim_CAF1 26293 120 - 1
GGGAAACGGGAAACUCGCAUCUGACCACCAUAUGACUGCAACUAACUGCUGUUGAACUCAACCUCAAACCUAAUAAAUAGCUUAAUUAGUCUGGUGUAUGUGCGAGUGGGUCCUGCGCUC
(((...(((((.((((((((.((..(((((...(((((((......))).((((....)))).........................))))))))))).))))))))...)))))..))) ( -34.50)
>DroEre_CAF1 12478 117 - 1
GG---ACAGGAAACUCGCAUCUGACCACCAUAUGACUGCAACUAACUGCUGUUGAACUCAACCUCAAACCUAAUAAAUAGCUUAAUUAGUCUGGUGUAUGUGAGAGUGGGUCCUGCGCUC
.(---.(((((..(((((.(((.(((((((...(((((((......))).((((....)))).........................)))))))))...)).)))))))))))))).... ( -30.40)
>DroYak_CAF1 7912 117 - 1
GG---ACAGGAAACUCGCAUCUGACCACCAUAUGACUGCAACUAACUGCUGUUGAACUCCACCUCAAACCUAAUAAAUAGCUUAAUUAGUCUGGUGUAUGUGAGAGUGGGUCCUGCGCUC
.(---.(((((..(((((.(((.(((((((...(((((.........((((((......................)))))).....))))))))))...)).)))))))))))))).... ( -29.29)
>consensus
GGGAAACGGGAAACUCGCAUCUGACCACCAUAUGACUGCAACUAACUGCUGUUGAACUCAACCUCAAACCUAAUAAAUAGCUUAAUUAGUCUGGUGUAUGUGCGAGUGGGUCCUGCGCUC
......(((((.((((((((.((..(((((...(((((((......))).((((....)))).........................))))))))))).))))))))...)))))..... (-29.78 = -30.14 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:24 2006