Locus 7241

Sequence ID 2L_DroMel_CAF1
Location 20,275,845 – 20,275,964
Length 119
Max. P 0.745698
window11596

overview

Window 6

Location 20,275,845 – 20,275,964
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 80.22
Mean single sequence MFE -19.86
Consensus MFE -14.71
Energy contribution -15.39
Covariance contribution 0.68
Combinations/Pair 1.23
Mean z-score -1.66
Structure conservation index 0.74
SVM decision value 0.46
SVM RNA-class probability 0.745698
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20275845 119 + 22407834
UGUCCAAUACGUUUUCCGCCCACCCACUCCGAUUACCAG-CGGUGAAAAAAAAACAAGUGGAAAAUGUAUAAAAUUAAGUCGGCAACUCGCAAGUAUGCAAUACAAAAAUACCCAAAUGC
......(((((((((((((.............(((((..-.)))))...........)))))))))))))........((..(((...(....)..)))...))................ ( -22.15)
>DroSec_CAF1 26716 118 + 1
UAUCCAAUACGCUUACCGCCCACCCACUCCGCUUACCAG-CGGUGGAAA-AAAACAAGUGGAAAAUGUAUAAAAUUAAGUCGGCAACUCGCAAGAAUGCAAUACAAAAAUACCCAAAUGC
..........((.....(((.((((((((((((....))-)))((....-....)))))))..(((.......)))..)).)))...((....))..))..................... ( -20.80)
>DroSim_CAF1 25587 118 + 1
UAUCCAAUACGUUUACCGCCCACCCACUCCGCUUACCAG-CGGUGGAAA-AAAACAAGUGGAAAAUGUAUAAAAUUAAGUCGGCAACUCGCAAGAAUGCAAUACAAAAAUACCCAAAUGC
......((((((((.((((.........(((((....))-)))((....-....)).)))).))))))))........((..(((..((....)).)))...))................ ( -24.00)
>DroEre_CAF1 6775 115 + 1
UAUCCAAUCCAUUUUCCGCCCACACACUCCGAUUACCAG-UGGCGAAAAAAA--CAAGCGGAAAAUGUAUAAAAUUAAGUCGGCCGCCCGAAAGUAUGCAAUACAAACAUA--CAAAUGC
.........((((((((((((((...............)-))).........--...))))))))))............((((....))))..(((((.........))))--)...... ( -22.36)
>DroYak_CAF1 7251 93 + 1
UAUCCAAUCCAUU-UCCACCCACACACUCCGAUUACAAGGCUGUGAAAAAAAAAAGAGUGGAAAAUGUAUAAAAUA--------------------------ACAAACAUACCCAAAUGC
.......((((((-(.........(((.((........))..)))..........)))))))..............--------------------------.................. ( -10.01)
>consensus
UAUCCAAUACGUUUUCCGCCCACCCACUCCGAUUACCAG_CGGUGAAAAAAAAACAAGUGGAAAAUGUAUAAAAUUAAGUCGGCAACUCGCAAGAAUGCAAUACAAAAAUACCCAAAUGC
......(((((((((((((.............(((((....)))))...........)))))))))))))............(((...(....)..)))..................... (-14.71 = -15.39 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:23 2006