Locus 7240

Sequence ID 2L_DroMel_CAF1
Location 20,275,564 – 20,275,675
Length 111
Max. P 0.528538
window11595

overview

Window 5

Location 20,275,564 – 20,275,675
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.10
Mean single sequence MFE -37.62
Consensus MFE -28.44
Energy contribution -29.24
Covariance contribution 0.80
Combinations/Pair 1.13
Mean z-score -1.56
Structure conservation index 0.76
SVM decision value -0.01
SVM RNA-class probability 0.528538
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20275564 111 - 22407834
AGU-----GAACUCAGUGGCAUAAGCGAAAUGGUUGCCAGCCUCGUCGGUUUCAAUUUGUGUGGCUCUCACGUAGCACGCACACAGAGCCACUUGCAGC----GUUUGCAGCACAAAUAC
.((-----(.....((((((..((.(((...(((.....)))...))).))......((((((((((....).))).))))))....))))))(((((.----..))))).)))...... ( -32.00)
>DroSec_CAF1 26421 111 - 1
AGU-----GAACUCAGCGGCAUAAGCGAAAUUGUUGCCGGCCUCGUCGGUUUCAAUUUGUGUGGCUCUCACGUAGCACGCACACAGAGCCACUUGCAGC----GUUUGCAGCACAAAUAC
.(.-----.(((...((.(((...((.((((((..((((((...))))))..))))))))((((((((..((.....)).....)))))))).))).))----)))..)........... ( -36.40)
>DroSim_CAF1 25292 111 - 1
AGU-----GAACUCAGCGGCAUAAGCGAAAUUGUUGCCGGCCUCGUCGGUUUCAAUUUGUGUGGCUCUCACGUAGCACGCACACAGAGCCACUUGCAGC----GUUUGCAGCACAAAUAC
.(.-----.(((...((.(((...((.((((((..((((((...))))))..))))))))((((((((..((.....)).....)))))))).))).))----)))..)........... ( -36.40)
>DroEre_CAF1 6462 113 - 1
AGUGAAGUGAACUCAGCGGCAUAAGCGAAAUUGUUGCCGACCUCGUCGGUUUCAAUUUGUGCGGCUCCCACGUAGCACGCACACAGCGCCACUUGCAGC-------CGCUGCACAAAUGC
.(((.((....))(((((((....((.((((((..((((((...))))))..))))))((((((((.......))).)))))...))((.....)).))-------))))))))...... ( -44.60)
>DroYak_CAF1 6966 115 - 1
AGU-----GAACUCAGCGGCAUAAGCGAAAUUGUUGCCGGCCUCGUCGGUUUCAAUUUGUGUGGGUCUCACGUAGCACGCACACAGAGCCACUUGCCACUUGCGUUUGCAGCACAAAUGC
.(.-----.(((.(((.((((...((.((((((..((((((...))))))..))))))(((((.((((.....)).)).)))))...))....)))).).)).)))..).(((....))) ( -38.70)
>consensus
AGU_____GAACUCAGCGGCAUAAGCGAAAUUGUUGCCGGCCUCGUCGGUUUCAAUUUGUGUGGCUCUCACGUAGCACGCACACAGAGCCACUUGCAGC____GUUUGCAGCACAAAUAC
...............(((((.......((((((..((((((...))))))..))))))(((((((((....).))).))))).....)))...(((((.......)))))))........ (-28.44 = -29.24 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:22 2006