| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,272,441 – 20,272,561 |
| Length | 120 |
| Max. P | 0.837373 |
| Location | 20,272,441 – 20,272,561 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.50 |
| Mean single sequence MFE | -42.88 |
| Consensus MFE | -38.76 |
| Energy contribution | -39.16 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837373 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20272441 120 - 22407834 AGGGGCAUCCGCAUUUAGAUGCGGGGCUUGGGAUUUGGGAUGGGCGGUGGGGUUAAAUCGCAGACGUUUAAAGCCGAAACCGCACAAUCAGCUAAAUAGCAAUUGCCGGGCUGUUUGGCA ..((((.(((((((....))))))))))).........(((..(((((.((.(((((.((....)))))))..))...)))))...))).((((((((((.........)))))))))). ( -42.10) >DroSec_CAF1 23296 120 - 1 AGGGGCAUCCGCAUUCAGAUGCGGGGCUUCGGAUUCGGGAUGGGCGGUGGGGUUAAAUCGCAGACGUUUAAAGCCGAAACCGCACAAUCAGCUAAAUAGCAAUUGCCGGGCUGUGUGGCA .(((((.(((((((....))))))))))))((.(((((((((.(((((........)))))...)))).....))))).))((.((..(((((.....((....))..)))))..)))). ( -44.50) >DroSim_CAF1 22176 120 - 1 AGGGGCAUCCGCAUUCAGAUGCGGGGCUUCGGAUUCGGGAUGGGCGGUGGGGUUAAAUCGCAGACGUUUAAAGCCGAAACCGCACAAUCAGCUAAAUAGCAAUUGCCGGGCUGUUUGGCA .(((((.(((((((....))))))))))))((.(((((((((.(((((........)))))...)))).....))))).)).........((((((((((.........)))))))))). ( -46.30) >DroEre_CAF1 3458 120 - 1 AGGGGCAUCCGCAUUUGGAUGCGGGGCCUGGGAUUUGGGGUGGUCGUUGGGGCUAAAUCGCAGACGCUUAAAGCCGAAACCGCACAAUCAGCUAAAUAGCAAUUGCCGGGCUGUUUGGCA ..((((.(((((((....)))))))))))..((((((.(((..(((((...((......)).)))((.....)).)).))).)).)))).((((((((((.........)))))))))). ( -44.20) >DroYak_CAF1 3892 120 - 1 AGGGGCAUCCGCAUUUAGAUUCGGGGCUUGGGAUUCGGGGAUGGCGGUGGGGCUAAAUCGCAGACGUUUAAAGCCGAAACCGCACAAUCAGCUAAAUAGCAAUUGCCGGGCUGUUUGGCA ..((((.((((.((....)).))))))))..........(((.(((((..((((....((....)).....))))...)))))...))).((((((((((.........)))))))))). ( -37.30) >consensus AGGGGCAUCCGCAUUUAGAUGCGGGGCUUGGGAUUCGGGAUGGGCGGUGGGGUUAAAUCGCAGACGUUUAAAGCCGAAACCGCACAAUCAGCUAAAUAGCAAUUGCCGGGCUGUUUGGCA ..((((.(((((((....))))))))))).((.(((((((((.(((((........)))))...)))).....))))).)).........((((((((((.........)))))))))). (-38.76 = -39.16 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:09 2006