Locus 7232

Sequence ID 2L_DroMel_CAF1
Location 20,270,795 – 20,270,902
Length 107
Max. P 0.617600
window11572

overview

Window 2

Location 20,270,795 – 20,270,902
Length 107
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.07
Mean single sequence MFE -34.80
Consensus MFE -21.84
Energy contribution -23.64
Covariance contribution 1.80
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.63
SVM decision value 0.17
SVM RNA-class probability 0.617600
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20270795 107 + 22407834
----------GCACCCUGGGCUUCCUU---GCCCAGCCAGGACGAGUGCAGCUCGAAGCGCAUCCAGCCCAAAAGUAUGCAACAAUUUAUGCAUGUUUACAAAGGCAAUUCCUGCAACAC
----------.....((((((......---)))))).(((((.(..(((.((.....)))))..).(((...(((((((((........))))))))).....)))...)))))...... ( -33.10)
>DroSec_CAF1 21658 118 + 1
GGCUGCCUGGGCUCCCUGGGCUUCCUGG--GCCCAGCCAGGACGAGUGCAACUCGAAGCGCAUCCAGCCCAAAAGUAUGCAACAAUUUAUGCAUGUUUACAAAGGCAAUUCCUGCAACAC
((.((((((((((...((.(((((((((--......))))))((((.....)))).))).))...)))))..(((((((((........)))))))))....)))))...))........ ( -42.20)
>DroSim_CAF1 20529 118 + 1
GGCUGCCUGGGCUCCCUGGGCUUCCUGG--GCCCAGCCAGGACGAGUGCAGCUCGAAGCGCAUCCAGCCCAAAAGUAUGCAACAAUUUAUGCAUGUUUACAAAGGCAAUUCCUGCAACAC
((.((((((((((...((.(((((((((--......))))))((((.....)))).))).))...)))))..(((((((((........)))))))))....)))))...))........ ( -42.50)
>DroEre_CAF1 1915 98 + 1
-----------------GGG-----AGGUUGCCCAGCCAGGACGAGUGCAACUCGAGGCGCAGCCAGCCCAAAAGUAUGCAACAAUUUAUGCAUGUUUACAGAGGCAAUUCCAGCAGCAC
-----------------(((-----(((((((...(((....((((.....)))).))))))))).((((..(((((((((........)))))))))...).)))..))))........ ( -30.70)
>DroYak_CAF1 1918 96 + 1
-----------------GGG-----AGG--GCCGAACCAGGACGAGUGCAACUCGAGGCGCAUCCAGCCCAAAAGUAUGCAACAAUUUAUGCAUGUUUACAAAGGCAAUUCCAGCAACAC
-----------------(((-----(..--(((.........((((.....)))).(((.......)))...(((((((((........))))))))).....)))..))))........ ( -25.50)
>consensus
__________GC_CCCUGGGCUUCCUGG__GCCCAGCCAGGACGAGUGCAACUCGAAGCGCAUCCAGCCCAAAAGUAUGCAACAAUUUAUGCAUGUUUACAAAGGCAAUUCCUGCAACAC
...............((((((.........)))))).(((((...((((........)))).....(((...(((((((((........))))))))).....)))...)))))...... (-21.84 = -23.64 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:01 2006