Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,259,329 – 20,259,433 |
Length | 104 |
Max. P | 0.999287 |
Location | 20,259,329 – 20,259,433 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.69 |
Mean single sequence MFE | -38.86 |
Consensus MFE | -36.52 |
Energy contribution | -36.36 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -2.18 |
Structure conservation index | 0.94 |
SVM decision value | 3.49 |
SVM RNA-class probability | 0.999287 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20259329 104 + 22407834 AC--------U--GGGGAUGCCGAGGAAACCGCUUAUCAGGCAAAUUUCUCGCCUUGUGCUGGCGCGCAUUAUUGAGAAAUUAAGCGCACAGCGUGUGCAUUCCCACACAACAC------ ..--------(--(((((((((((((((...(((.....)))...)))))))......((((..((((....((((....)))))))).))))....)))))))))........------ ( -38.00) >DroSec_CAF1 20868 104 + 1 AC--------U--GGGGAUGCCGAGGAAACCGCUUAUCAGGCAAAUUUCUCGCCUUGUGCUGGCGCGCAUUAUUGAGAAAUUAAGCGCACAGCGUGUGCAUUCCCACACAACAC------ ..--------(--(((((((((((((((...(((.....)))...)))))))......((((..((((....((((....)))))))).))))....)))))))))........------ ( -38.00) >DroSim_CAF1 19734 104 + 1 AC--------U--GGGGAUGCCGAGGAAACCGCUUAUCAGGCAAAUUUCUCGCCUUGUGCUGGCGCGCAUUAUUGAGAAAUUAAGCGCACAGCGUGUGCAUUCCCACACAACAC------ ..--------(--(((((((((((((((...(((.....)))...)))))))......((((..((((....((((....)))))))).))))....)))))))))........------ ( -38.00) >DroEre_CAF1 1133 111 + 1 GCUGGGGGAGC--GGGGAUGCCGAGGAAG-CGCUUAUCAGGCAAAUUUCUCGCCUUGUGCUGGCGCGCAUUAUUGAGAAAUUAAGCGCACAGCGUGUGCAUUUCCACACAACAC------ (((.....)))--((..(((((((((((.-.(((.....)))...)))))))......((((..((((....((((....)))))))).))))....))))..)).........------ ( -38.30) >DroYak_CAF1 1159 120 + 1 ACAGGGGUGGCUUGGGGAUGCCGAGGAAACCGCUUAUCAGGCAAAUUUCUCGCCUUGUGCUGGCGCGCAUUAUUGAGAAAUUAAGCGCACAGCGUGUGCAUUCCCACACAACACGUGCAA ...(..(((...((((((((((((((((...(((.....)))...)))))))......((((..((((....((((....)))))))).))))....))))))))))))..)........ ( -42.00) >consensus AC________U__GGGGAUGCCGAGGAAACCGCUUAUCAGGCAAAUUUCUCGCCUUGUGCUGGCGCGCAUUAUUGAGAAAUUAAGCGCACAGCGUGUGCAUUCCCACACAACAC______ .............(((((((((((((((...(((.....)))...)))))))......((((..((((...(((....)))...)))).))))....))))))))............... (-36.52 = -36.36 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:00 2006