Locus 7230

Sequence ID 2L_DroMel_CAF1
Location 20,259,061 – 20,259,181
Length 120
Max. P 0.559741
window11570

overview

Window 0

Location 20,259,061 – 20,259,181
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.00
Mean single sequence MFE -36.13
Consensus MFE -27.04
Energy contribution -28.84
Covariance contribution 1.80
Combinations/Pair 1.11
Mean z-score -1.79
Structure conservation index 0.75
SVM decision value 0.05
SVM RNA-class probability 0.559741
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20259061 120 - 22407834
AAGUCAAAAAAGGGCUGACUGAAGGUAAACGGCAGUGGGCGCUUCUAUGCAGGGGAAAUAAUAAUGGCGCCCAGCUGUGAGCUGCAUUUGAAGAAGUCCCGUUGAGUGUGGGCCAAUUAA
.(((((.........)))))...(((..(((((..((((((((..(((............)))..)))))))))))))...(..((((..(.(......).)..))))..))))...... ( -36.60)
>DroSec_CAF1 20601 120 - 1
AAGUCAAAAAAGGGCUGACUGAAGGUAAACGGCAGUGGGCGCUGAUAUGCAGGGGAAAUAAUAAUGGCGCCCAGCUGUGAGUUGCAUUUGAAGAAGUCCCGUUGAGUGUGGGCCAAUUAA
.(((((.........)))))...(((..(((((..(((((((((.(((............))).))))))))))))))...(..((((..(.(......).)..))))..))))...... ( -34.90)
>DroSim_CAF1 19468 120 - 1
AAGUCAAAAAAGGGCUGACUGAAGGUAAACGGCAGUGGGCGCUGCUAUGCAGGGGAAAUAAUAAUGGCGCCCAGCUGUGAGCUGCAUUUGAAGAAGUCCCGUUGAGUGUGGGCCAAUUAA
.(((((.........)))))...(((..(((((..((((((((..(((............)))..)))))))))))))...(..((((..(.(......).)..))))..))))...... ( -37.30)
>DroEre_CAF1 865 111 - 1
AAGUCAAAAAAGGGCUGACUGAAGGUAAACGGC---------UGCGGUGCAGGGGAAAUAAUAAUGGCGCCCAGCUGUGAGCUGCAUUUGAAGAAGUCCCGCUGAGUGUGGGCCAAUUGA
...((((.....(((.((((...(((..(((((---------((.(((((................))))))))))))..)))...........))))((((.....)))))))..)))) ( -33.43)
>DroYak_CAF1 887 120 - 1
AAGUCAGAAAAGGGCUGACUGAAGGUAAACGGCAGCGACUGCUGCUAUGCAGGGGAAAUAAUAAUGGCGCCCAGCUGUGAGCUGCAUUUGAAGAAGUCCCGUUGAGUGCGGGCCAAUUAA
.((((((.......))))))...(((.....(((((..((((......))))(((...((....))...))).)))))...(((((((..(.(......).)..))))))))))...... ( -38.40)
>consensus
AAGUCAAAAAAGGGCUGACUGAAGGUAAACGGCAGUGGGCGCUGCUAUGCAGGGGAAAUAAUAAUGGCGCCCAGCUGUGAGCUGCAUUUGAAGAAGUCCCGUUGAGUGUGGGCCAAUUAA
.(((((.........)))))...(((..(((((..((((((((..(((............)))..)))))))))))))...((((((((((.(......).)))))))))))))...... (-27.04 = -28.84 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:59 2006