Locus 723

Sequence ID 2L_DroMel_CAF1
Location 2,096,356 – 2,096,448
Length 92
Max. P 0.972734
window1184

overview

Window 4

Location 2,096,356 – 2,096,448
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 91.52
Mean single sequence MFE -21.25
Consensus MFE -18.92
Energy contribution -19.20
Covariance contribution 0.28
Combinations/Pair 1.04
Mean z-score -2.06
Structure conservation index 0.89
SVM decision value 1.70
SVM RNA-class probability 0.972734
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2096356 92 - 22407834
CUGUAUCAUUAAUUACGAUGGUUUGUUUAAAGAAUGGCCGCACAGACCGCAAUCGCCAUUCGGCCGCCACUCGAUAAUAAAUCAUUUACCUU
..(((........)))(((((((((((....((.((((.((...((..((....))...)).)).)))).))...)))))))))))...... ( -22.20)
>DroSec_CAF1 113453 92 - 1
CUGUAUCAUUAAUUACGAUGGUUUGUUUAAAGAAUGGCCGCACAGACCGCAAUCGCCAUUCGGACGCCACUCGAUAAUAAAUCAUUUACCUU
..(((........)))(((((((((((....((.((((.((.......))....(((....)).))))).))...)))))))))))...... ( -19.30)
>DroSim_CAF1 113307 92 - 1
CUGUAUCAUUAAUUACGAUGGUUUGUUUAAAGAAUGGCCGCAUAGACCGCAAUCGCCAUUCGGCCGCCACUCGAUAAUAAAUCAUUUACCUU
..(((........)))(((((((((((....((.((((.((...((..((....))...)).)).)))).))...)))))))))))...... ( -22.20)
>DroEre_CAF1 116086 92 - 1
CUGUAUCAUUAAUUACGAUGGUUUGUUUAAAGAAUGGCCGCAAAGACCGCAAUCGCCGCUGGGCCGCCACUCGAUAAUAAAUCAUUUACCUU
..(((........)))(((((((((((....((.((((.((..((.(.((....)).)))..)).)))).))...)))))))))))...... ( -24.60)
>DroYak_CAF1 118162 92 - 1
CUGUAUCAUUAAUUACGAUGGUUUGUUUAAAGAAUGGCCGCACAGACCGCAAUCGCCAUUCGGCCGCCACUCGAUAAUAAAUCAUUUACCUU
..(((........)))(((((((((((....((.((((.((...((..((....))...)).)).)))).))...)))))))))))...... ( -22.20)
>DroAna_CAF1 117350 75 - 1
CUGUAUCAUUAAUUACAAUGGUUUGUUUAAAGAAUGG-----------------GCCAUUCGGCCGCCACUCGAUAAUAAAUCAUUUACCUU
..(((........)))(((((((((((....((.(((-----------------(((....)))..))).))...)))))))))))...... ( -17.00)
>consensus
CUGUAUCAUUAAUUACGAUGGUUUGUUUAAAGAAUGGCCGCACAGACCGCAAUCGCCAUUCGGCCGCCACUCGAUAAUAAAUCAUUUACCUU
..(((........)))(((((((((((....((.((((.((.......))....(((....))).)))).))...)))))))))))...... (-18.92 = -19.20 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:52 2006