Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,258,150 – 20,258,267 |
Length | 117 |
Max. P | 0.591235 |
Location | 20,258,150 – 20,258,267 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -21.60 |
Consensus MFE | -16.26 |
Energy contribution | -17.23 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.08 |
Mean z-score | -1.44 |
Structure conservation index | 0.75 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591235 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20258150 117 + 22407834 UCGCAUGCGAAAGCAC---ACUCCCCAGUACUUUUCCCCCACAGGAUCCCCCCAGUUCACCGAGUUAAAUACCCACUGCCAUGCCACGCAUCCCUAAUGCUUGUGUCUAUAUGGCAAAUU .....(((....))).---((((......(((..(((......))).......))).....))))...........(((((((..(((((...........)))))...))))))).... ( -21.30) >DroSec_CAF1 19706 114 + 1 UCGCGUGCGAAAGCACGACACACCUC----CACUCCCCCCACAGGAUCC--CCAGUUCGCCGAGUUAAAUACCCACUGCCAUGCCACGCAUCCCUAAUGCUUGUGUCUAUAUGGCAAAUU ..((((((....))))).).......----.((((.....((.((....--)).)).....))))...........(((((((..(((((...........)))))...))))))).... ( -27.40) >DroSim_CAF1 18560 115 + 1 NNNNNNNNNNNNNNNNNNNNNNCCCC----CACUCCCCCCACAGGAUCC-CCCAGUUCGCCGAGUUAAAUACCCACUGCCAUGCCACGCAUCCCUAAUGCUUGUGUCUAUAUGGCAAAUU ..........................----.((((.....((.((....-.)).)).....))))...........(((((((..(((((...........)))))...))))))).... ( -16.10) >consensus UCGC_UGCGAAAGCAC___AC_CCCC____CACUCCCCCCACAGGAUCC_CCCAGUUCGCCGAGUUAAAUACCCACUGCCAUGCCACGCAUCCCUAAUGCUUGUGUCUAUAUGGCAAAUU ...(((((....)))))..............((((.....((.((......)).)).....))))...........(((((((..(((((...........)))))...))))))).... (-16.26 = -17.23 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:55 2006