Locus 7227

Sequence ID 2L_DroMel_CAF1
Location 20,257,721 – 20,257,841
Length 120
Max. P 0.605377
window11564

overview

Window 4

Location 20,257,721 – 20,257,841
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 87.57
Mean single sequence MFE -36.23
Consensus MFE -28.82
Energy contribution -30.15
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -1.96
Structure conservation index 0.80
SVM decision value 0.15
SVM RNA-class probability 0.605377
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20257721 120 + 22407834
AUAUGGAACAGCACACAUAUGAAUCCGCCGUGUGGAUCACAGUUUAUGAUUGGGCUACAAUCAAUUGAAUCCUGUCUAUGGGGCCCUCGAGGAAUUCCCCUUCGAAAGUGCUAGGCUGUC
.......(((((.(((..........(((.((((((.((..(((((((((((.....))))))..)))))..)))))))).)))..((((((.......))))))..)))....))))). ( -35.10)
>DroSec_CAF1 19295 106 + 1
---UGGAAUAGCACACAUAUGAUUCC---GUGU--------GUUUAUGAUUGGGCUACAAUCAAUUGAAUCCUGUCUAUUGGGCCCUCGAGGAAUUCCCCUUCGAGGGUGCUAGGCUGUC
---.(((..(((((((..........---))))--------)))..((((((.....))))))......))).(((((..(.((((((((((.......)))))))))).)))))).... ( -38.40)
>DroSim_CAF1 17734 114 + 1
---UGGAAUAGCACACAUAUGAAUUC---GUGUGCAUCACUGUUUAUGAUUGGGCUACAAUCAAUUGAAUCCUGUCUAUGGGGCCCUCGAGGAAUUCCCCUUCAAGGGUGCUAGGCUGUC
---.(((...((((((..........---))))))...........((((((.....))))))......))).((((..((.(((((.((((.......)))).))))).)))))).... ( -35.20)
>consensus
___UGGAAUAGCACACAUAUGAAUCC___GUGUG_AUCAC_GUUUAUGAUUGGGCUACAAUCAAUUGAAUCCUGUCUAUGGGGCCCUCGAGGAAUUCCCCUUCGAGGGUGCUAGGCUGUC
....(((....(((((.............)))))............((((((.....))))))......))).(((((..(.((((((((((.......)))))))))).)))))).... (-28.82 = -30.15 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:54 2006