Locus 7225

Sequence ID 2L_DroMel_CAF1
Location 20,257,363 – 20,257,483
Length 120
Max. P 0.658740
window11561

overview

Window 1

Location 20,257,363 – 20,257,483
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -54.73
Consensus MFE -49.72
Energy contribution -49.83
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.88
Structure conservation index 0.91
SVM decision value 0.26
SVM RNA-class probability 0.658740
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20257363 120 - 22407834
CCAGCCUGGCGCUUUGAUAAAGUGCAGUCCCCGCAGCAUAAACAAUGAGGAUAUGUGGCCAGGAACCACCUUCCGUGGGCGGCUCCUCCUCAGUGGCUGGCGUGGGGGCGUGGCCAGGGC
....(((((((((((....))).)).((((((((.((.((..((.((((((...((.(((.((((.....))))...))).))...)))))).))..))))))))))))...)))))).. ( -56.40)
>DroSec_CAF1 18976 120 - 1
CCAGCCCAGCGCUUUGAUAAAGUGCAGUCCCCGCAGCAUAAACAAUGAGGAUAUGUGGCCAGGAACCACCUUACGUGGGCGGCUCCUCCUCCGAGCCUGGCGUGGGGGCGUGGCCAGGGC
...((((.((((((.....)))))).((((((((.(((((..(.....)..))))).((((((..((((.....)))).(((........)))..)))))))))))))).......)))) ( -54.00)
>DroSim_CAF1 17415 120 - 1
CCAGCCCGGCGCUUUGAUAAAGUGCAGUCCCCGCAGCAUAAACAAUGAGGAUAUGUGGCCAGGAACCACCUUCCGUGGGCGGCUCCUCCUCCGAGCCUGGCGUGGGGGCGUGGCCAGGGC
...((((.((((((.....)))))).((((((((.(((((..(.....)..))))).((((((..((((.....)))).(((........)))..)))))))))))))).......)))) ( -53.80)
>consensus
CCAGCCCGGCGCUUUGAUAAAGUGCAGUCCCCGCAGCAUAAACAAUGAGGAUAUGUGGCCAGGAACCACCUUCCGUGGGCGGCUCCUCCUCCGAGCCUGGCGUGGGGGCGUGGCCAGGGC
...((((.((((((.....)))))).((((((((.((.........(((((...((.(((.((((.....))))...))).))...)))))........)))))))))).......)))) (-49.72 = -49.83 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:51 2006