Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,256,621 – 20,256,781 |
Length | 160 |
Max. P | 0.678569 |
Location | 20,256,621 – 20,256,741 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -36.60 |
Consensus MFE | -34.03 |
Energy contribution | -34.37 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.93 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678569 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20256621 120 - 22407834 CCCUUCGUGUUUACUUUUGCACGCACAUUUAGCCGGCGGCAGUUAGAUUCAUUUUUGGCUGUAUACUUACGUGUGCGUGUUAGUAUCUGUGUAACGGUGUAUCUGUGUUGCUGUGCAUCU ...........((((...((((((((((.(((..(...(((((((((......)))))))))...)))).)))))))))).))))..........(((((((..(.....).))))))). ( -34.20) >DroSec_CAF1 18248 120 - 1 CCCUUCGUGUUUACUUUUGCACGCACAUUUAGCCGGCGGCAGUUAGAUUCAUUUUUGGCUGUGUACUUACGUGUGCGUGUUAGUAUCUGUGUAGCGGUGUAUCUGUGUAGCUGUGCAUCG ...........((((...((((((((((.(((...(((.((((((((......)))))))))))..))).)))))))))).))))..((..((((.(..(....)..).))))..))... ( -37.80) >DroSim_CAF1 16684 120 - 1 CCCUUCGUGUUUACUUUUGCACGCACAUUUAGCCGGCGGCAGUUAGAUUCAUUUUUGGCUGUGUACUUACGUGUGCGUGUUAGUAUCUGUGUAGCGGUGUAUCUGUGUAGCUGUGCAUCU ...........((((...((((((((((.(((...(((.((((((((......)))))))))))..))).)))))))))).))))..((..((((.(..(....)..).))))..))... ( -37.80) >consensus CCCUUCGUGUUUACUUUUGCACGCACAUUUAGCCGGCGGCAGUUAGAUUCAUUUUUGGCUGUGUACUUACGUGUGCGUGUUAGUAUCUGUGUAGCGGUGUAUCUGUGUAGCUGUGCAUCU ...........((((...((((((((((.(((...(((.((((((((......)))))))))))..))).)))))))))).))))..........(((((((..(.....).))))))). (-34.03 = -34.37 + 0.33)
Location | 20,256,661 – 20,256,781 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -35.77 |
Consensus MFE | -34.11 |
Energy contribution | -33.89 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.47 |
Structure conservation index | 0.95 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20256661 120 - 22407834 CACCGCUACCGCCCGCCCGCCCUUCUCCAUCGGCGGCCCUCCCUUCGUGUUUACUUUUGCACGCACAUUUAGCCGGCGGCAGUUAGAUUCAUUUUUGGCUGUAUACUUACGUGUGCGUGU ((((((.((((((.(((((((..........))))).........(((((........)))))........)).))))(((((((((......)))))))))........))))).))). ( -36.70) >DroSec_CAF1 18288 120 - 1 CACCGCUACCGCCCGUCCGCCCUUCUCCAUCGGCGGCCUUCCCUUCGUGUUUACUUUUGCACGCACAUUUAGCCGGCGGCAGUUAGAUUCAUUUUUGGCUGUGUACUUACGUGUGCGUGU (((.((....))..(.(((((..........))))).)........))).........((((((((((.(((...(((.((((((((......)))))))))))..))).)))))))))) ( -35.70) >DroSim_CAF1 16724 120 - 1 CACCGCUACCGACCGUCCGCCCUUCUCCAUCGGCGGCCUUCCCUUCGUGUUUACUUUUGCACGCACAUUUAGCCGGCGGCAGUUAGAUUCAUUUUUGGCUGUGUACUUACGUGUGCGUGU ...(((....((..(.(((((..........))))))..)).....))).........((((((((((.(((...(((.((((((((......)))))))))))..))).)))))))))) ( -34.90) >consensus CACCGCUACCGCCCGUCCGCCCUUCUCCAUCGGCGGCCUUCCCUUCGUGUUUACUUUUGCACGCACAUUUAGCCGGCGGCAGUUAGAUUCAUUUUUGGCUGUGUACUUACGUGUGCGUGU .(((((.((((.(((((.(((..........)))(((........(((((........)))))........))))))))((((((((......))))))))........)).))))).)) (-34.11 = -33.89 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:50 2006