Locus 7222

Sequence ID 2L_DroMel_CAF1
Location 20,255,955 – 20,256,075
Length 120
Max. P 0.681723
window11555

overview

Window 5

Location 20,255,955 – 20,256,075
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.94
Mean single sequence MFE -31.77
Consensus MFE -27.97
Energy contribution -28.20
Covariance contribution 0.23
Combinations/Pair 1.05
Mean z-score -2.08
Structure conservation index 0.88
SVM decision value 0.31
SVM RNA-class probability 0.681723
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20255955 120 + 22407834
ACAAGUGUACUUUGUCUGCUCUAAAACGAAGUUUGGGGGCUUACUGCGAAAAUAUUCUGCAAAGUCAACUUGGCCUCGAUAUUGCUGAGCUCCAUAUAUCCGAUAUUAAGUACUUGUAAU
(((((((.(((((((.(......).)))))))...((((((((..((((...((((..((.(((....))).))...)))))))))))))))).................)))))))... ( -27.90)
>DroSec_CAF1 17581 119 + 1
ACAAGUGUACUUUGUCUGCUCUAAAACGAAGUUUG-GGGCUUACUGCGAAAAUAUCCUGUCAAGUCAACUUGGCCUCGAUAUUGCUGAGCUGCAUAUAUCCGAUAUUAAGUACUUGUAAU
(((((((...(((((..((((((((......))))-)))).....)))))((((((..((((((....))))))...((((((((......))).))))).))))))...)))))))... ( -32.20)
>DroSim_CAF1 16010 120 + 1
ACAAGUGUACUUUGUCUGCUCUAAAACGAAGUUUGUGGGCUUACUGCGAAAAUAUCCUGCCAAGUCAACUUGGCCUCGAUAUUGCUGAGCUCCAUAUAUCCGAUAUUAAGUACUUGUAAU
(((((((.(((((((.(......).))))))).((((((((((..((((...((((..((((((....))))))...))))))))))))).)))))..............)))))))... ( -35.20)
>consensus
ACAAGUGUACUUUGUCUGCUCUAAAACGAAGUUUG_GGGCUUACUGCGAAAAUAUCCUGCCAAGUCAACUUGGCCUCGAUAUUGCUGAGCUCCAUAUAUCCGAUAUUAAGUACUUGUAAU
(((((((.(((((((.(......).))))))).((.(((((((..((((...((((..((((((....))))))...)))))))))))))))))................)))))))... (-27.97 = -28.20 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:46 2006