Locus 7221

Sequence ID 2L_DroMel_CAF1
Location 20,255,496 – 20,255,616
Length 120
Max. P 0.700242
window11554

overview

Window 4

Location 20,255,496 – 20,255,616
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -32.70
Consensus MFE -31.43
Energy contribution -32.27
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.96
SVM decision value 0.35
SVM RNA-class probability 0.700242
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20255496 120 + 22407834
UGCAUACAUUUAGGCGCCCAGCAAUGUUUACUUUGGACUGGGCCUGAAAGCCCCACAGUCUGGCAAGGAAAAUUGUUAUGAAAUUCUCAGCUCAGUGCAAUUUUUCUGCCUAUCUCAAUC
..........((((((((((....))........(((((((((......))))...)))))))).(((((((((((..(((..........)))..))))))))))))))))........ ( -34.20)
>DroSec_CAF1 17116 120 + 1
UGCAUACAUUUAGGCGCCCAGCACUGUUUACUUUGGACUGGGCCUGAAAGCCCCACAGUCUGGCAAGGAAAAUCGUUAUGAAAUUCUCAGCUCAGUGCAAUUUUUCUGCCUAUCUCAAUC
..........((((((((.((.(((((...(....)...((((......)))).)))))))))).((((((((.((..(((..........)))..)).)))))))))))))........ ( -29.90)
>DroSim_CAF1 15539 120 + 1
UGCAUACAUUUAGGCGCCCAGCACUGUUUACUUUGGACUGGGCCUGAAAGCCCCACAGUCUGGCAAGGAAAAUUGUUAUGAAAUUCUCGGCUCAGUGCAAUUUUUCUGCCUAUCUCAAUC
..........((((((((.((.(((((...(....)...((((......)))).)))))))))).(((((((((((..(((..........)))..))))))))))))))))........ ( -34.00)
>consensus
UGCAUACAUUUAGGCGCCCAGCACUGUUUACUUUGGACUGGGCCUGAAAGCCCCACAGUCUGGCAAGGAAAAUUGUUAUGAAAUUCUCAGCUCAGUGCAAUUUUUCUGCCUAUCUCAAUC
..........((((((((((....))........(((((((((......))))...)))))))).(((((((((((..(((..........)))..))))))))))))))))........ (-31.43 = -32.27 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:45 2006