Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,095,111 – 2,095,207 |
Length | 96 |
Max. P | 0.607608 |
Location | 2,095,111 – 2,095,207 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 79.36 |
Mean single sequence MFE | -23.32 |
Consensus MFE | -16.30 |
Energy contribution | -16.41 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.30 |
Mean z-score | -1.21 |
Structure conservation index | 0.70 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607608 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2095111 96 - 22407834 AAGUGAUUGCUUCAUUGCUGAUUUUUGCAGUGCAGUGAAGCAAACCGGA-------GGUGGGUGUAGCCAAAGUGAACCGAGAUAAAACCGAAA--GCAGCA--------GCU-- ......((((((((((((.............))))))))))))..(((.-------(((.......)))...(....)..........)))..(--((....--------)))-- ( -23.92) >DroSec_CAF1 112211 96 - 1 AAGUAAAUGCUUCAUUGCUGAUUUUUGCAGUGCAGUGAAGCAAACCGGA-------GGUGGGUGUAGCCAAAGUCAACCGAGAUAAAACCGAAA--GCAGCA--------GCU-- .......(((((((((((.............)))))))))))...(((.-------(((.......)))...(((......)))....)))..(--((....--------)))-- ( -24.62) >DroSim_CAF1 112053 96 - 1 AAGUGAUUGCUUCAUUGCUGAUUUUUGCAGUGCAGUGAAGCAAACCGGA-------GGUGGGUGUAGCCAAAGUGAACCGAGAUAAAACCGAAA--GCAGCA--------GCU-- ......((((((((((((.............))))))))))))..(((.-------(((.......)))...(....)..........)))..(--((....--------)))-- ( -23.92) >DroEre_CAF1 114791 92 - 1 AAGUGAUUGCUUCAUUGCUGAUAUUUGCAGUGCAGUGAAGCAAAACAGA-------GGU----AAAGCCAAAGUGAACCGAGAUAAAACCGAAA--GCGGCA--------GCU-- ..((..((((((((((((.............)))))))))))).))...-------...----...(((...(....)...........(....--).))).--------...-- ( -23.32) >DroYak_CAF1 116830 94 - 1 AAGUGAUUGCUUCAUUGCUUAUUUUUGCAGUGCAGUGAAGCGAACCGGA-------GGU----AAAGCCAAAGUGAACCGAGAUAAAACCGAAA--GCAGCA--------GCUGA ......((((((((((((.............))))))))))))..(((.-------((.----....))...(....)..........)))..(--((....--------))).. ( -23.52) >DroAna_CAF1 116114 112 - 1 AAGUGAUUGCUUCAUUGCUUAUUUUUU-UGUUCAGUCAGGCAAGCUAAACAAAAAAAAAAGGAAAACUAAAAGUAAGCUGAGAUAAAGCUGAACAGACAGUAAAAAUAUUGCU-- .((..((((((((.((.(((.((((((-((((.(((.......))).)))))))))).))).))........((.((((.......))))..)).)).)))).....))..))-- ( -20.60) >consensus AAGUGAUUGCUUCAUUGCUGAUUUUUGCAGUGCAGUGAAGCAAACCGGA_______GGUGGGUAAAGCCAAAGUGAACCGAGAUAAAACCGAAA__GCAGCA________GCU__ ..((..((((((((((((.............))))))))))))..(((........(((.......)))........)))................))................. (-16.30 = -16.41 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:51 2006