Locus 7215

Sequence ID 2L_DroMel_CAF1
Location 20,252,491 – 20,252,611
Length 120
Max. P 0.947358
window11537

overview

Window 7

Location 20,252,491 – 20,252,611
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -47.47
Consensus MFE -46.62
Energy contribution -47.40
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -2.22
Structure conservation index 0.98
SVM decision value 1.37
SVM RNA-class probability 0.947358
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20252491 120 + 22407834
CUCACGGAUCCAACGGCUGAUUCAUGGGGGCCAGUCGAAUGUGCGCAAUGCGCUAUCGGGGAAUUAUUGGACGAUAAGCUUGAUAAGCCCCAGUCCGCACGCACUGGCAUUGGCUCCCAC
.....(((((........))))).(((((((((((.(...(((((...((((..((.((((..((((..(.(.....).)..)))).)))).)).)))))))))...)))))))))))). ( -45.70)
>DroSec_CAF1 14016 120 + 1
CUCACGGAUCCAACGGCUGAUUCAUGGCGGCCAGUCGAAUGUGCGCAAUGCGCUAUCGGGGAAUUAUUGGCCGAUAAGCUUGAUAAGCCCCCGUCCGCACGCAAUGGCACUGGCUCCCAC
.....(((((........))))).(((.(((((((.(....((((...((((....(((((..((((..(.(.....).)..))))..)))))..))))))))....)))))))).))). ( -44.00)
>DroSim_CAF1 12449 120 + 1
CUCACGGAUCCAACGGCUGAUUCAUGGGGGCCAGUCGAAUGUGCGCAAUGCGCUAUCGGGGAAUUAUUGGCCGAUAAGCUUGAUAAGCCCCCGUCCGCACGCACUAGCACUGGCUCCCAC
.....(((((........))))).(((((((((((.(...(((((...((((....(((((..((((..(.(.....).)..))))..)))))..)))))))))...)))))))))))). ( -52.70)
>consensus
CUCACGGAUCCAACGGCUGAUUCAUGGGGGCCAGUCGAAUGUGCGCAAUGCGCUAUCGGGGAAUUAUUGGCCGAUAAGCUUGAUAAGCCCCCGUCCGCACGCACUGGCACUGGCUCCCAC
.....(((((........))))).(((((((((((.(...(((((...((((....(((((..((((..(.(.....).)..))))..)))))..)))))))))...)))))))))))). (-46.62 = -47.40 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:30 2006