Locus 7214

Sequence ID 2L_DroMel_CAF1
Location 20,251,779 – 20,251,896
Length 117
Max. P 0.553813
window11536

overview

Window 6

Location 20,251,779 – 20,251,896
Length 117
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.52
Mean single sequence MFE -39.40
Consensus MFE -37.17
Energy contribution -37.83
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.94
SVM decision value 0.04
SVM RNA-class probability 0.553813
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20251779 117 - 22407834
---AAAAAUGCCGAACAUUGUCGCACUAAAGCUGAGCGCCAGCUAUCCGCUGAUGCCGGGCCACAAGGACGAGGGCAAUAUCCUUGCGCUGGACCAAUUGGCGCUGCAGCAGCAAAUCAG
---.....((((((......))).......((((((((((((...(((((....).))))......((.(.((.((((.....)))).)).).))..)))))))).)))).)))...... ( -37.80)
>DroSec_CAF1 13325 117 - 1
---AAAAAUGCCGAACAUUGUCGCAUUAAAGCUGAGCGCCAGCUAUCCGCUGAUGGCGGGCCACAAGGACGAGAGCAAUAUCCUUGCGCUGGACCAAUUGGCUCUGCAGCAGCAAAUCAG
---...(((((.((......)))))))..(((((.....)))))....((((...((((((((...((.(.((.((((.....)))).)).).))...)))).))))..))))....... ( -38.80)
>DroSim_CAF1 11734 120 - 1
AAAAAAAAUGCCGAACAUUGUCGCACUAAAGCUGAGCGCCAGCUAUCCGCUGAUGGCGGGCCACAAGGACGGGGGCAAUAUCCUUGCGCUGGACCAAUUGGCGCUGCAGCAGCAAAUCAG
........((((((......))).......(((((((((((((((((....))))))((.(((((((((...........))))))...))).))...))))))).)))).)))...... ( -41.60)
>consensus
___AAAAAUGCCGAACAUUGUCGCACUAAAGCUGAGCGCCAGCUAUCCGCUGAUGGCGGGCCACAAGGACGAGGGCAAUAUCCUUGCGCUGGACCAAUUGGCGCUGCAGCAGCAAAUCAG
........((((((......))).......(((((((((((((((((....))))))((.(((((((((...........))))))...))).))...))))))).)))).)))...... (-37.17 = -37.83 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:29 2006