Locus 7213

Sequence ID 2L_DroMel_CAF1
Location 20,251,619 – 20,251,739
Length 120
Max. P 0.602173
window11535

overview

Window 5

Location 20,251,619 – 20,251,739
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -42.50
Consensus MFE -40.87
Energy contribution -40.87
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.96
SVM decision value 0.14
SVM RNA-class probability 0.602173
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20251619 120 - 22407834
ACGCCAUCCGAGCGAAAAACGCUGGUCUUCAUUGCCAAAAAAUGGCUGCACAUCCAGAUGCUGUGGCGCGAGUUCCGGCUGAGGGAUAAGCAAAUACGGCGGCUUGGCCACAAGGAUGCA
..((.((((..((.((...(((((.........((((.....))))(((..((((....((((..((....))..))))....))))..)))....)))))..)).)).....)))))). ( -42.10)
>DroSec_CAF1 13165 120 - 1
ACGCCAUCCGAGCGAAAAACGCUGGACUUCAUUGCCAAAAAAUGGCUGCACAUCCAGAUGCUGUGGCGCGAGUUUCGGCUGAGGGAUAAGCAAAUACGGCGGCGUGGCCACAAGGAUGCG
.((((.(((.((((.....))))))).......((((.....))))(((..((((....((((..((....))..))))....))))..))).....))))((((..((....)))))). ( -42.70)
>DroSim_CAF1 11574 120 - 1
ACGCCAUCCGAGCGAAAAACGCUGGACUUCAUUGCCAAAAAAUGGCUGCACAUCCAGAUGCUGUGGCGCGAGUUUCGGCUGAGGGAUAAGCAAAUACGGCGGCGUGGCCACAAGGAUGCG
.((((.(((.((((.....))))))).......((((.....))))(((..((((....((((..((....))..))))....))))..))).....))))((((..((....)))))). ( -42.70)
>consensus
ACGCCAUCCGAGCGAAAAACGCUGGACUUCAUUGCCAAAAAAUGGCUGCACAUCCAGAUGCUGUGGCGCGAGUUUCGGCUGAGGGAUAAGCAAAUACGGCGGCGUGGCCACAAGGAUGCG
..((.((((..((.(....(((((.........((((.....))))(((..((((....((((..((....))..))))....))))..)))....)))))...).)).....)))))). (-40.87 = -40.87 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:28 2006