Locus 7210

Sequence ID 2L_DroMel_CAF1
Location 20,249,766 – 20,249,886
Length 120
Max. P 0.662162
window11525

overview

Window 5

Location 20,249,766 – 20,249,886
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.22
Mean single sequence MFE -29.63
Consensus MFE -26.92
Energy contribution -27.37
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.90
Structure conservation index 0.91
SVM decision value 0.27
SVM RNA-class probability 0.662162
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20249766 120 + 22407834
CUUAAUAAAUCUUAUUAAAGUGCUCGCACAGCCUCUAAAAUAUGCUACGUUUUUAUUUUCCGCCGUUCGUUGCUUUUGGCCAACACCACACGGUGGAAUUUGAACCACCAUUUAAGAGGC
.((((((.....)))))).(((....))).((((((.((((.((....((((.....(((((((((..(((((.....).)))).....)))))))))...))))))..)))).)))))) ( -29.70)
>DroSec_CAF1 11355 120 + 1
CUUAAUAAAUCUUAUUAAAGUGCGCGCACAGCCUCUAAAAUAUGCUACGUUUUUAUUUUCCGCCGUUCGUUGCUUUUGGCCAACGCCACUCGGUGGAAUUUGAACCACCAUUUAAGAGGC
.((((((.....)))))).(((....))).((((((.((((.((....((((.....((((((((..((((((.....).))))).....))))))))...))))))..)))).)))))) ( -31.30)
>DroSim_CAF1 9751 120 + 1
CUUAAUAAAUCUUAUUAAAGUGCGCGCACAGCCUCUAAAAUAUGCUACGUUUUUAUUUUGCGCCGUUCGUUGUUUUUGGCCAACGCCACUCGGUGGAAUUUGAACCACCAUUUAAGAGGC
.((((((.....)))))).(((....))).((((((.((((................(((.((((...........)))))))........(((((........))))))))).)))))) ( -27.90)
>consensus
CUUAAUAAAUCUUAUUAAAGUGCGCGCACAGCCUCUAAAAUAUGCUACGUUUUUAUUUUCCGCCGUUCGUUGCUUUUGGCCAACGCCACUCGGUGGAAUUUGAACCACCAUUUAAGAGGC
.((((((.....)))))).(((....))).((((((.((((.((....((((.....((((((((..((((((.....).))))).....))))))))...))))))..)))).)))))) (-26.92 = -27.37 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:19 2006