Locus 721

Sequence ID 2L_DroMel_CAF1
Location 2,093,765 – 2,093,858
Length 93
Max. P 0.602093
window1182

overview

Window 2

Location 2,093,765 – 2,093,858
Length 93
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 72.79
Mean single sequence MFE -23.58
Consensus MFE -5.42
Energy contribution -5.22
Covariance contribution -0.20
Combinations/Pair 1.17
Mean z-score -1.64
Structure conservation index 0.23
SVM decision value 0.14
SVM RNA-class probability 0.602093
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2093765 93 - 22407834
ACACCGAAGG----GCAGCAGCA------GCAUGUGCCACAUCUGCAUCUGCAUCUGCAGCAGCAGCCAUAAUUGCAAUAACACGAGCCAUUCGUUCGUUCAU
....((((.(----((.((((..------(((.((((.......)))).)))..))))....((((......))))..........))).))))......... ( -25.50)
>DroSec_CAF1 110843 90 - 1
ACACCGAGGG----GCAGCCGCAUGUGCCGCAUGUGCCACAUCUGCAUCUG---------CAGCAGCCAUAAUGGCAAUAACACGAGCCAUUCGUUCGUUCGU
....((((.(----((.((.(((.((((.(.(((.....)))).)))).))---------).)).(((.....)))..........))).))))......... ( -27.30)
>DroSim_CAF1 110696 81 - 1
ACACCGAGGG----GCAGCCGCA---------UGUGCCACAUCUGCAUCUG---------CAGCAGCCAUAAUGGCAAUAACACGAGCCAUUCGUUCGUUCGU
....((((.(----((.((.(((---------.((((.......)))).))---------).)).(((.....)))..........))).))))......... ( -24.50)
>DroEre_CAF1 113452 76 - 1
ACGC-GAGAG----GCAGCAGCA---------UCUGCCGCAUCUGCAACUGCAA---------CAGCCGUAAUAACAAUAACACGAGCGAGCCA----UUCAU
....-(((.(----((.((.((.---------...)).)).(((((....))).---------..(((((............))).))))))).----))).. ( -17.40)
>DroYak_CAF1 115403 82 - 1
ACAC-GAGUGGCAAGCAGCAGCA---------UCUGCCACAUCUGCAACUGCAACUG---CAGCAGUCAUAAUAACAAUAACACG----AGCCA----UUCAU
....-(((((((..((((..((.---------...)).....)))).(((((.....---..)))))..................----.))))----))).. ( -23.20)
>consensus
ACACCGAGGG____GCAGCAGCA_________UGUGCCACAUCUGCAUCUGCA_______CAGCAGCCAUAAUAGCAAUAACACGAGCCAUUCGUUCGUUCAU
.....(((......((((..(((...........))).....))))...................((.......))......................))).. ( -5.42 =  -5.22 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:50 2006