| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,247,338 – 20,247,498 |
| Length | 160 |
| Max. P | 0.971701 |
| Location | 20,247,338 – 20,247,458 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 98.33 |
| Mean single sequence MFE | -22.40 |
| Consensus MFE | -22.62 |
| Energy contribution | -22.40 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.03 |
| Structure conservation index | 1.01 |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.931729 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20247338 120 + 22407834 CUCAUUUAGUUAGAAUUAACUUGCUGCUCUAUCCAUUACUCACUUCGUUUUAUGUUUUUCCAACUCGUAGAGCAUUUUUCAUUUGGCCAAUUUCGGUUAAAUUAACUUUGCCUUUGCGAG ......((((.((......)).)))).....................................(((((((((((......((((((((......))))))))......)).))))))))) ( -21.40) >DroSec_CAF1 5874 120 + 1 CUCAUUUAGCUAGAAUUAACUUGCUGCUCCCUCCAUUACUCACUUCGUUUUAUGUUUUUCCAACUCGUAGAGCAUUUUUCAUUUGGCCAAUUUCGGUUAAAUUAACUUUGCCUUUGCGAG ......((((.((......)).)))).....................................(((((((((((......((((((((......))))))))......)).))))))))) ( -22.90) >DroSim_CAF1 6305 120 + 1 CUCAUUUAGCUAGAAUUAACUUGCUGCUCCCUCCAUUACUCACUUCGUUUUAUGUUUUUCCAACUCGUAGAGCAUUUUUCAUUUGGCCAAUUUCGGUUAAAUUAACUUUGCCUUUGCGAG ......((((.((......)).)))).....................................(((((((((((......((((((((......))))))))......)).))))))))) ( -22.90) >consensus CUCAUUUAGCUAGAAUUAACUUGCUGCUCCCUCCAUUACUCACUUCGUUUUAUGUUUUUCCAACUCGUAGAGCAUUUUUCAUUUGGCCAAUUUCGGUUAAAUUAACUUUGCCUUUGCGAG ......((((.((......)).)))).....................................(((((((((((......((((((((......))))))))......)).))))))))) (-22.62 = -22.40 + -0.22)
| Location | 20,247,378 – 20,247,498 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 99.44 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -22.80 |
| Energy contribution | -22.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.18 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.971701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20247378 120 + 22407834 CACUUCGUUUUAUGUUUUUCCAACUCGUAGAGCAUUUUUCAUUUGGCCAAUUUCGGUUAAAUUAACUUUGCCUUUGCGAGCUCUGUCCAAAAUAAUAUUCUGACCCACUCAUAAAACACU ......((((((((.........(((((((((((......((((((((......))))))))......)).)))))))))....(((..((......))..))).....))))))))... ( -27.00) >DroSec_CAF1 5914 120 + 1 CACUUCGUUUUAUGUUUUUCCAACUCGUAGAGCAUUUUUCAUUUGGCCAAUUUCGGUUAAAUUAACUUUGCCUUUGCGAGCUCUGUCCAAAAUAAUAUUCUGACCCACUCAUAAACCACU ......(.((((((.........(((((((((((......((((((((......))))))))......)).)))))))))....(((..((......))..))).....)))))).)... ( -22.80) >DroSim_CAF1 6345 120 + 1 CACUUCGUUUUAUGUUUUUCCAACUCGUAGAGCAUUUUUCAUUUGGCCAAUUUCGGUUAAAUUAACUUUGCCUUUGCGAGCUCUGUCCAAAAUAAUAUUCUGACCCACUCAUAAACCACU ......(.((((((.........(((((((((((......((((((((......))))))))......)).)))))))))....(((..((......))..))).....)))))).)... ( -22.80) >consensus CACUUCGUUUUAUGUUUUUCCAACUCGUAGAGCAUUUUUCAUUUGGCCAAUUUCGGUUAAAUUAACUUUGCCUUUGCGAGCUCUGUCCAAAAUAAUAUUCUGACCCACUCAUAAACCACU ......(.((((((.........(((((((((((......((((((((......))))))))......)).)))))))))....(((..((......))..))).....)))))).)... (-22.80 = -22.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:10 2006