Locus 7205

Sequence ID 2L_DroMel_CAF1
Location 20,245,605 – 20,245,725
Length 120
Max. P 0.520621
window11508

overview

Window 8

Location 20,245,605 – 20,245,725
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 99.44
Mean single sequence MFE -29.03
Consensus MFE -29.30
Energy contribution -29.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 1.01
SVM decision value -0.03
SVM RNA-class probability 0.520621
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20245605 120 + 22407834
CCAGCCACGAGCAAGUGCAGCAAGAAGUUAACAUGACCAUGAAUUUGAGCUGCCAAAGUUCAUUUUUAAUUUAGCGCGCACACACAUCCUCCGAAAAAGGAAACGCACUCCGAGGAGAAC
...((.....))..((((.((...((((((((((....)))....((((((.....))))))...))))))).))..)))).....(((((.((....(....)....)).))))).... ( -29.30)
>DroSec_CAF1 4168 119 + 1
CCAGCCACGAGCAAGUGCAGCAAGAAGUUAACAUGACCAUGAAUUUGAGCUGCCAAAGUUCAUUUUUAAUUUAGCGCGCACACACAUCCUCCGAA-AAGGAAACGCACUCCGAGGAGAAC
...((.....))..((((.((...((((((((((....)))....((((((.....))))))...))))))).))..)))).....(((((.((.-..(....)....)).))))).... ( -28.90)
>DroSim_CAF1 4354 119 + 1
CCAGCCACGAGCAAGUGCAGCAAGAAGUUAACAUGACCAUGAAUUUGAGCUGCCAAAGUUCAUUUUUAAUUUAGCGCGCACACACAUCCUCCGAA-AAGGAAACGCACUCCGAGGAGAAC
...((.....))..((((.((...((((((((((....)))....((((((.....))))))...))))))).))..)))).....(((((.((.-..(....)....)).))))).... ( -28.90)
>consensus
CCAGCCACGAGCAAGUGCAGCAAGAAGUUAACAUGACCAUGAAUUUGAGCUGCCAAAGUUCAUUUUUAAUUUAGCGCGCACACACAUCCUCCGAA_AAGGAAACGCACUCCGAGGAGAAC
...((.....))..((((.((...((((((((((....)))....((((((.....))))))...))))))).))..)))).....(((((.((....(....)....)).))))).... (-29.30 = -29.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:05 2006