Locus 7204

Sequence ID 2L_DroMel_CAF1
Location 20,245,446 – 20,245,547
Length 101
Max. P 0.715945
window11507

overview

Window 7

Location 20,245,446 – 20,245,547
Length 101
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 85.28
Mean single sequence MFE -20.73
Consensus MFE -19.20
Energy contribution -19.87
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.17
Structure conservation index 0.93
SVM decision value 0.39
SVM RNA-class probability 0.715945
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20245446 101 - 22407834
UUGCCCC-------------------CCAAUCCAACCCACUCUACUCGUAACCACUUCAGCCAUUCCACCCUCGAUGUCCUUCGAAAGUUAGUUACGGACUGGCUUUAGCGUCUGUAUGA
.......-------------------...................(((((..(.((..(((((.(((....((((......))))..((.....))))).)))))..)).)....))))) ( -19.00)
>DroSec_CAF1 3990 120 - 1
UUGCCCCAAAAAAAACGCAAUCCAACCCAAGCCAACCCACUCCACUCGUAUCCACUCAAGCCACUCCACCCUCGAUGUCCUUCGAAAGUUAGUUACGGACUGGCUUUAGCGUCUGUAUGA
((((............)))).........................((((((.(.((.((((((.(((....((((......))))..((.....))))).)))))).)).)...)))))) ( -21.40)
>DroSim_CAF1 4176 120 - 1
UUGCCCCAAACACAACGCAGUCCAACCCAAGCCAACCCACUCCACUCGUAUCCACUCAAGCCACUCCACCCUCGAUGUCCUUCGAAAGUUAGUUACGGACUGGCUUUAGCGUCUGUAUGA
......((.(((..((((.............................((....))..((((((.(((....((((......))))..((.....))))).))))))..)))).))).)). ( -21.80)
>consensus
UUGCCCCAAA_A_AACGCA_UCCAACCCAAGCCAACCCACUCCACUCGUAUCCACUCAAGCCACUCCACCCUCGAUGUCCUUCGAAAGUUAGUUACGGACUGGCUUUAGCGUCUGUAUGA
.............................................((((((.(.((.((((((.(((....((((......))))..((.....))))).)))))).)).)...)))))) (-19.20 = -19.87 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:04 2006