Locus 7202

Sequence ID 2L_DroMel_CAF1
Location 20,244,753 – 20,244,870
Length 117
Max. P 0.500000
window11504

overview

Window 4

Location 20,244,753 – 20,244,870
Length 117
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 82.22
Mean single sequence MFE -28.64
Consensus MFE -20.35
Energy contribution -19.70
Covariance contribution -0.65
Combinations/Pair 1.28
Mean z-score -1.56
Structure conservation index 0.71
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20244753 117 + 22407834
AGUGCCUAUAUAUGGGGUAACCCAAGUAUUAUAUACUUCCUUGUAG---UUGUUCUAUUUUGGGAUACUUUCAUUUGGAAAACGAAACAUUCAAAAUAACCAAAGCGUACUUUGGUUAGG
((((((((...((((..((((.((((.............))))..)---)))..))))..)))).))))....((((((..........)))))).(((((((((....))))))))).. ( -26.82)
>DroSec_CAF1 3287 118 + 1
AGUGCCUAUAUGUGGGGGAACCUAAGUAUUAUAUUCCUCCUUAUAAUGGUAGUACUAUUUUGGGACACUCCCAUUAGGGAG--UCAUCAUUUAGAAUAACCAAAGCAUACGUUGGUUAGG
(.((((..((((.(((((((..((.....))..))))))).))))..)))).).(((...(((...((((((....)))))--)..)))..)))..(((((((........))))))).. ( -33.70)
>DroSim_CAF1 3472 120 + 1
AGUGCUUAUAUGUGGGGGAACCUAAGUAUUAUAUUCCUCCUUACAAUGCUAGUACCAUUUUGGGACACUCCCAUUAGGAAAAAGAAUCAUUUAGAAUAACCAAAGCAUACGUUGGUUAGA
.(((((..(((..(((((((..((.....))..))))))).....)))..))))).....((((.....)))).......................(((((((........))))))).. ( -25.40)
>consensus
AGUGCCUAUAUGUGGGGGAACCUAAGUAUUAUAUUCCUCCUUAUAAUG_UAGUACUAUUUUGGGACACUCCCAUUAGGAAAA_GAAUCAUUUAGAAUAACCAAAGCAUACGUUGGUUAGG
.(((((((.(((((((....))))..(((((((........))))))).......)))..)))).)))((((....))))................(((((((........))))))).. (-20.35 = -19.70 +  -0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:01 2006