| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,242,628 – 20,242,748 |
| Length | 120 |
| Max. P | 0.972179 |
| Location | 20,242,628 – 20,242,748 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.44 |
| Mean single sequence MFE | -40.42 |
| Consensus MFE | -36.39 |
| Energy contribution | -36.50 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -4.02 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.972179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20242628 120 + 22407834 UCACGCAAAACAAGCAACAACACCCUGUCGCCCCACAGGCGACAGACAGCCCCAAAAUAUGCAAAGAAUUGUGCACUAAGUGGGAGUUGACAAACUUGGCCACUCGGGCAUACAUGUGUA ..(((((...((((..........((((((((.....)))))))).((((((((.....((((........)))).....)))).)))).....))))(((.....))).....))))). ( -41.30) >DroSec_CAF1 1389 116 + 1 UCACGCAAAACAAGCAACAACACCCUGUCGCCCCAAAGGCGAC----AGCCCCAAAAUAUGCAAAGAAUUGUGCACUAAGUGGGAGUUGACAAACUCGGCCACUCGGGCAUACAUGUGUG .((((((......(((........((((((((.....))))))----))..........))).......(((((.(..((((((((((....)))))..)))))..))))))..)))))) ( -41.27) >DroSim_CAF1 1386 120 + 1 UCACGCAAAACAAGCAACAACACCCCGUCGCCCCAAAGGCGACAGACAGCCCCAAAAUAUGCAAAGAAUGGUGCACUAAGUGGGAGUUGACAAACUCGGCCACUCGGGCAUAAAUGUGUG .((((((...................((((((.....)))))).....((((.......((((........))))...((((((((((....)))))..))))).)))).....)))))) ( -38.70) >consensus UCACGCAAAACAAGCAACAACACCCUGUCGCCCCAAAGGCGACAGACAGCCCCAAAAUAUGCAAAGAAUUGUGCACUAAGUGGGAGUUGACAAACUCGGCCACUCGGGCAUACAUGUGUG .((((((...................((((((.....)))))).....((((.......((((........))))...((((((((((....)))))..))))).)))).....)))))) (-36.39 = -36.50 + 0.11)
| Location | 20,242,628 – 20,242,748 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.44 |
| Mean single sequence MFE | -42.73 |
| Consensus MFE | -39.63 |
| Energy contribution | -40.63 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.913796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20242628 120 - 22407834 UACACAUGUAUGCCCGAGUGGCCAAGUUUGUCAACUCCCACUUAGUGCACAAUUCUUUGCAUAUUUUGGGGCUGUCUGUCGCCUGUGGGGCGACAGGGUGUUGUUGCUUGUUUUGCGUGA ....((((((.(((.....)))(((((....(((((((((....(((((........)))))....)))))...(((((((((.....)))))))))..))))..)))))...)))))). ( -42.70) >DroSec_CAF1 1389 116 - 1 CACACAUGUAUGCCCGAGUGGCCGAGUUUGUCAACUCCCACUUAGUGCACAAUUCUUUGCAUAUUUUGGGGCU----GUCGCCUUUGGGGCGACAGGGUGUUGUUGCUUGUUUUGCGUGA ....((((((.(((.....)))(((((....(((((((((....(((((........)))))....)))))((----((((((.....))))))))...))))..)))))...)))))). ( -41.90) >DroSim_CAF1 1386 120 - 1 CACACAUUUAUGCCCGAGUGGCCGAGUUUGUCAACUCCCACUUAGUGCACCAUUCUUUGCAUAUUUUGGGGCUGUCUGUCGCCUUUGGGGCGACGGGGUGUUGUUGCUUGUUUUGCGUGA (((((((....((((((((((..(((((....))))))))))).(((((........)))))......))))..(((((((((.....)))))))))))))....((.......))))). ( -43.60) >consensus CACACAUGUAUGCCCGAGUGGCCGAGUUUGUCAACUCCCACUUAGUGCACAAUUCUUUGCAUAUUUUGGGGCUGUCUGUCGCCUUUGGGGCGACAGGGUGUUGUUGCUUGUUUUGCGUGA (((((((....((((((((((..(((((....))))))))))).(((((........)))))......))))..(((((((((.....)))))))))))))....((.......))))). (-39.63 = -40.63 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:00 2006