| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,217,803 – 20,217,923 |
| Length | 120 |
| Max. P | 0.831945 |
| Location | 20,217,803 – 20,217,923 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.84 |
| Mean single sequence MFE | -32.02 |
| Consensus MFE | -18.56 |
| Energy contribution | -19.57 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.831945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20217803 120 + 22407834 AGCGAUUCAUUUCUCAGUAAGGGGUGAAAUGAAACCCAUUCAUUUUCCAUUGAGGGGAGUGAUGUGAGUGAUGUGCUUUUCUCAUUUGCACUAUUCAUUCUCGGUUUGCACUUGUUUUUU .((..(((((..((.....))..)))))...(((((...(((((..((.....))..))))).(.((((((.((((...........))))...)))))).))))))))........... ( -35.90) >DroEre_CAF1 16078 114 + 1 --AGAUUCAUUUCUCUUUAAGGGG-AAAAUGCAAACCAUUCAUUUUCCAUUGAGGGGA--AAUGUGAGUGAUGAGCCCAACUGAUUUGCACUAUUCAUUUUUGGUUUGUCGUU-UUUUCU --.....(((((((((((((..((-((((((.((....)))))))))).)))))))))--)))).((((((..((((....(((..........))).....))))..)))))-)..... ( -30.80) >DroYak_CAF1 13984 117 + 1 AGAAAUUCAUUUCUCCUUAAAGGGAAAAAUCCUUAACAUUCAUUUUCCAUUGAGGGGA--AAUGUGAGUGAUGUGCUUAACUGAUUUGCACUAUUCAUU-UUGGUUUGUCGUUGUUUUUU .((....(((((((((((((.((((((...............)))))).)))))))))--)))).((((((.((((...........))))...)))))-).......)).......... ( -29.36) >consensus AGAGAUUCAUUUCUCAUUAAGGGG_AAAAUGCAAACCAUUCAUUUUCCAUUGAGGGGA__AAUGUGAGUGAUGUGCUUAACUGAUUUGCACUAUUCAUU_UUGGUUUGUCGUUGUUUUUU .......(((((((((((((..((.((((((.........)))))))).)))))))))..)))).((((((.((((...........))))...)))))).................... (-18.56 = -19.57 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:58 2006