Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 255,014 – 255,106 |
Length | 92 |
Max. P | 0.967291 |
Location | 255,014 – 255,106 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 97.50 |
Mean single sequence MFE | -24.98 |
Consensus MFE | -22.72 |
Energy contribution | -23.12 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 0.91 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 255014 92 + 22407834 UCGUUUCGCUUUCGUUUUUGGGGCUUGGCCCAGGCAUAGAAGCGUGAAAAUUGCGCUCUAAGUCAAUGCACAUCAACAAAAGCAACAAUUAC .......(((((.(((..((((((...)))).(((.((((.(((..(...)..))))))).)))......))..))).)))))......... ( -27.30) >DroSec_CAF1 46763 92 + 1 UCGUUUCGCUUUCGUUUUUGGGGCUUGGCCCAGGCAAAGAAGCGUGAAAAUUGCGCUCUAAGUCAAUGCACAUCAACAAAAGCAACAAUUAC .......(((((.(((..((((((...)))).(((..(((.(((..(...)..))))))..)))......))..))).)))))......... ( -25.10) >DroSim_CAF1 48421 92 + 1 UCGUUUCGCUUUCGUUUUUGGGGCUUGGCCCAGGCAAAGAAGCGUGAAAAUUGCGCUCUAAGUCAAUGCACAUCAACAAAAGCAACAAUUAC .......(((((.(((..((((((...)))).(((..(((.(((..(...)..))))))..)))......))..))).)))))......... ( -25.10) >DroEre_CAF1 48808 92 + 1 ACGUUUCGCUUUCGUUUUUGGGGCUUGGCCCAGGCAAAGAAGCGUGAAAAUUGCGCUCUAAGUCAAUGCACAUCAACAAAAGCAACAAUUAC .......(((((.(((..((((((...)))).(((..(((.(((..(...)..))))))..)))......))..))).)))))......... ( -25.10) >DroYak_CAF1 50286 91 + 1 CCGUUUCGCUUUCGAUUUUG-GGCUUGGCCCAGGCAAAGAAGCGUGAAAAUUGCGCUCUAAGUCAAUGCACAUCAACAAAAGCAACAAUUGC .......(((((.(....((-(((...)))))(((..(((.(((..(...)..))))))..)))............).)))))......... ( -22.30) >consensus UCGUUUCGCUUUCGUUUUUGGGGCUUGGCCCAGGCAAAGAAGCGUGAAAAUUGCGCUCUAAGUCAAUGCACAUCAACAAAAGCAACAAUUAC .......(((((.(((..((((((...)))).(((..(((.(((..(...)..))))))..)))......))..))).)))))......... (-22.72 = -23.12 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:03 2006