Locus 7198

Sequence ID 2L_DroMel_CAF1
Location 20,215,972 – 20,216,080
Length 108
Max. P 0.826557
window11494

overview

Window 4

Location 20,215,972 – 20,216,080
Length 108
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 83.09
Mean single sequence MFE -28.54
Consensus MFE -23.38
Energy contribution -23.83
Covariance contribution 0.45
Combinations/Pair 1.15
Mean z-score -1.91
Structure conservation index 0.82
SVM decision value 0.70
SVM RNA-class probability 0.826557
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20215972 108 - 22407834
UUAUGCGCUAUUUAUUUCUUUUUCAUUUUUAUGUGGACUGGCGGCUGGUUGAGAACUAAACGAGAUUUUACGCUCAAACGAACAG----GCCGCCAGUCAACGCA--------AAAACAA
...((((................(((......)))(((((((((((..(((((...((((......))))..))))).......)----))))))))))..))))--------....... ( -32.90)
>DroEre_CAF1 12658 110 - 1
UUAUGCGUUAUUUGUU------UCAUUUUUAUGUGGAUUGGCGGCUGGUUGAGAACUAUACGAGAUUUUACGCUCAAACGAACAG----GCCGCCAGUCAGCGCAAUGUAAAAAAAACAA
...((((((.......------.(((......)))(((((((((((..(((((...................))))).......)----))))))))))))))))............... ( -31.41)
>DroYak_CAF1 10228 104 - 1
UUAUGCGUUAUUUAUU------UUAUUUUUAUGUGGAUUGG---CUGGUUGAGAACUAAACGAGAUUUUACGCUUAAACGAACAGACCGGCCGUCAGUCAGCGCA-------AAAAACAA
...((((((......(------((((......)))))..((---((((((((((.((.....)).)))).((......))....)))))))).......))))))-------........ ( -21.30)
>consensus
UUAUGCGUUAUUUAUU______UCAUUUUUAUGUGGAUUGGCGGCUGGUUGAGAACUAAACGAGAUUUUACGCUCAAACGAACAG____GCCGCCAGUCAGCGCA_______AAAAACAA
...((((((..............(((......)))((((((((((((((.....))))...(((........)))..............))))))))))))))))............... (-23.38 = -23.83 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:52 2006