Locus 7194

Sequence ID 2L_DroMel_CAF1
Location 20,212,298 – 20,212,418
Length 120
Max. P 0.994181
window11486

overview

Window 6

Location 20,212,298 – 20,212,418
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.58
Mean single sequence MFE -31.86
Consensus MFE -29.84
Energy contribution -29.84
Covariance contribution -0.00
Combinations/Pair 1.09
Mean z-score -1.83
Structure conservation index 0.94
SVM decision value 2.46
SVM RNA-class probability 0.994181
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20212298 120 + 22407834
UUAAUCCUUCAAGUGCGCAAGUGCACACAUGCAAAGCUGGCUGUGAAACAGUUUGAUAUAUUUAUAAAUGCAAAUGCAUGCGGGAUUUGCUCAGUGGUGCAGAAGUAUUAAAUUAAUGCC
(((((.((((..(((((....)))))...((((..((((((((.....)))).................((((((.(.....).)))))).))))..)))))))).)))))......... ( -33.60)
>DroSec_CAF1 53533 120 + 1
UUAAUCCUUCAAGUGCGCAAGUGUACACAUGCGAAGCUGGCUGUGAAACAGUUUGAUAUAUUUAUAAAUGCAAAUGCAUGCGGGAUUUGCUCAGUGGUGCAGAAGUAUUAAAUUAAUGCA
(((((.((((..(((((....)))))...((((..((((((((.....)))).................((((((.(.....).)))))).))))..)))))))).)))))......... ( -30.90)
>DroSim_CAF1 30705 120 + 1
UUAAUCCUUCAAGUGCGCAAGUGAACACAUGCGAAGCUGGCUGUGAAACAGUUUGAUAUAUUUAUAAAUGCAAAUGCAUGCGGGAUUUGCUCAGUGGUGCAGAAGUAUUAAAUUAAUGCA
(((((.((((....((....)).......((((..((((((((.....)))).................((((((.(.....).)))))).))))..)))))))).)))))......... ( -28.50)
>DroEre_CAF1 9081 119 + 1
UUAAUCCUUCAAGUGCGCA-GUGCACACAUGCGAAGCUGGCUGUGAAACAGUUUGAUAUAUUUAUAAAUGCAAAUUCAUGCGGGAUUUGCGCGGUGGUGCAGAAGUAUUAAAUUAAUGCA
(((((.((((..((((...-..))))...((((..((((((((.....)))).................((((((((.....)))))))).))))..)))))))).)))))......... ( -32.80)
>DroYak_CAF1 6673 120 + 1
UUAAUCCUUCAAGUGCGCAAGUGCACACAUGCGAAGCAGGCUGUGUAACAGUUUGAUAUAUUUAUAAAUGCAAAUUCAUGCGGGAUUUGCUCAGUGGUGCAGAAGUAUUAAAUUAAUGCA
(((((.((((....((....))((((.(((..((..(((((((.....)))))))..............((((((((.....)))))))))).))))))).)))).)))))......... ( -33.50)
>consensus
UUAAUCCUUCAAGUGCGCAAGUGCACACAUGCGAAGCUGGCUGUGAAACAGUUUGAUAUAUUUAUAAAUGCAAAUGCAUGCGGGAUUUGCUCAGUGGUGCAGAAGUAUUAAAUUAAUGCA
(((((.((((..(((((....)))))...((((..((((((((.....)))).................((((((.(.....).)))))).))))..)))))))).)))))......... (-29.84 = -29.84 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:45 2006