Locus 7192

Sequence ID 2L_DroMel_CAF1
Location 20,142,723 – 20,142,838
Length 115
Max. P 0.898262
window11483

overview

Window 3

Location 20,142,723 – 20,142,838
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.97
Mean single sequence MFE -27.44
Consensus MFE -22.48
Energy contribution -22.84
Covariance contribution 0.36
Combinations/Pair 1.09
Mean z-score -1.76
Structure conservation index 0.82
SVM decision value 1.00
SVM RNA-class probability 0.898262
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20142723 115 - 22407834
-----ACAACCAGCAGGCGGUAUAAUAUCCAUCAUUAUGGCAGGGCCACCGCCAUCCCUCAACAUUAUUAGGCCAAAAUGUAUGCAUUAUGUUUUAGUAUGUAUUUUCAUUACCGCCGCG
-----.......((.(((((((..............(((((.((....)))))))......((((.(((((..((.((((....)))).))..)))))))))........))))))))). ( -31.80)
>DroSec_CAF1 4602 115 - 1
-----ACAACCAGCAGGCGGUAUAAUAUCCAUCAUUAUGGCAGGACCACCACCAUUCCUCAACAUUAUUAGCCCAAAAUGUAUGCAUAAUGUUUUAGUAUGUAUUUUCAUUACCGCCGCG
-----.......((.((((((((((((.........((((..((....)).))))..........)))))....(((((((((((.(((....))))))))))))))...))))))))). ( -25.21)
>DroSim_CAF1 6811 115 - 1
-----ACAACCAGCAGGCGGUAUAAUAUCCAUCAUUAUGGCAGGGCCACCACCAUCCCUCAACAUUAUUAGCCCAAAAUGUAUGCAUUAUGUUUUAGUAUGUAUUUUCAUUACCGCCGCG
-----.......((.(((((((..............((((..((....)).))))......((((.(((((..((.((((....)))).))..)))))))))........))))))))). ( -27.60)
>DroEre_CAF1 6033 116 - 1
AACCAGCAACCAGCGGGCGGUAUAAUAUCCAUCAUUAUGGCAGGGACA---CCAUCCCCGAGCAUUAUUAGCCCGAAAUGUAUGCAUUAUGUUUUAGUAUGUAUUUUCAUUACCG-CGCG
.....((......(((((((........)).........((.(((...---.....)))..)).......))))).((((.((((((.((......))))))))...))))...)-)... ( -26.20)
>DroYak_CAF1 3780 120 - 1
AACCAGCAACCAGCGGGCGGUAUAAUAUCCAUCAUUAUGGCAGAGCCACCACCAUCCCUGAACAUUAUUAGCCCAAAAUAUAUGCAUUAUGUUUUAGUAUGUAUUUUCAUUACCGCCGCG
............((((.((((((((((....(((..((((...........))))...)))....)))))....(((((((((((...........)))))))))))...))))))))). ( -26.40)
>consensus
_____ACAACCAGCAGGCGGUAUAAUAUCCAUCAUUAUGGCAGGGCCACCACCAUCCCUCAACAUUAUUAGCCCAAAAUGUAUGCAUUAUGUUUUAGUAUGUAUUUUCAUUACCGCCGCG
............((.(((((((......((((....)))).((((..........))))..((((.(((((..((.((((....)))).))..)))))))))........))))))))). (-22.48 = -22.84 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:42 2006