Locus 7191

Sequence ID 2L_DroMel_CAF1
Location 20,141,870 – 20,142,097
Length 227
Max. P 0.995890
window11475 window11476 window11477 window11478 window11479 window11480 window11481 window11482

overview

Window 5

Location 20,141,870 – 20,141,977
Length 107
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.75
Mean single sequence MFE -36.46
Consensus MFE -26.87
Energy contribution -26.95
Covariance contribution 0.08
Combinations/Pair 1.10
Mean z-score -2.44
Structure conservation index 0.74
SVM decision value 1.32
SVM RNA-class probability 0.941812
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20141870 107 + 22407834
---GAGCAGCAUUUCCUCGCUUUUCCGGCUGCAGUCAGAAAAGCGUAGCAAAAAGACGGGGAAAAUGUGGCAGAAUUGGGGGACAGGGAA----------CUGGAGGUCCUGUGUAAAAA
---..((.((((((((((((((((...(((((.((.......))))))).))))).))))).)))))).)).......((((.(((....----------)))....))))......... ( -34.30)
>DroSec_CAF1 3754 107 + 1
---GAGCAGCAUUUCCUCCCUUUUCCGGCUGCAGUCAGAAAAGCGUAGCGAAAAGACGGGGAAAAUGUGGCAGAAUUGGGGGACAGGGGA----------CUGGAGGUCCUGUGUAAAAA
---..((.((((((((((.((((((..(((((.((.......)))))))))))))..)))).)))))).))...........(((.((((----------(.....))))).)))..... ( -35.30)
>DroSim_CAF1 5421 110 + 1
GAGGAGCAGCAUUUCCUCGCUUUUCCGGCUGCAGUCAGAAAAGCGUAGCGAAAAGACGGGGAAAAUGUGGCAGAAUGGGGGGACAGGGGA----------CUGGAGGUCCUGUGUAAAAA
.....((.(((((((((((((((((..(((((.((.......))))))))))))).))))).)))))).))...........(((.((((----------(.....))))).)))..... ( -39.50)
>DroEre_CAF1 5162 115 + 1
---CAGCAGCAUUUCCUCGCUUUUCCGGCUGCAACGAGAAAAGCGAAGCAAAAAGA-GGGGAAAAUGUGGCGGAAU-GGGGGACAGGGGGUGCGGGGCUGCAGGAGGUCCUGUGUAAAAA
---.(((.((((..(((((((((((((.......)).)))))))))..........-...................-.(....).))..))))...)))(((((....)))))....... ( -38.60)
>DroYak_CAF1 2930 116 + 1
---GAGCAGCAUUUCCUCGCUUUUCCGGCUGCAGCCAGAAAAGUGAAGCAAAAUGA-GGGGAAAAUGUGGCUGAAUUAGGAGACAGGGGGUUCGGGGAUGCAUGAGGUCCUGUGUAAAAA
---.(((.(((((((((((((((((.(((....))).)))))))....(.....).-)))).)))))).)))......(....).((((.((((........)))).))))......... ( -34.60)
>consensus
___GAGCAGCAUUUCCUCGCUUUUCCGGCUGCAGUCAGAAAAGCGUAGCAAAAAGACGGGGAAAAUGUGGCAGAAUUGGGGGACAGGGGA__________CUGGAGGUCCUGUGUAAAAA
.....((.(((((((((((((((((.(((....))).)))))))....(.....)..)))).)))))).)).........(.((((((...................)))))).)..... (-26.87 = -26.95 +   0.08)

alignment

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secondary structure

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Window 6

Location 20,141,870 – 20,141,977
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.75
Mean single sequence MFE -26.12
Consensus MFE -19.16
Energy contribution -20.08
Covariance contribution 0.92
Combinations/Pair 1.04
Mean z-score -1.90
Structure conservation index 0.73
SVM decision value 0.50
SVM RNA-class probability 0.758765
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20141870 107 - 22407834
UUUUUACACAGGACCUCCAG----------UUCCCUGUCCCCCAAUUCUGCCACAUUUUCCCCGUCUUUUUGCUACGCUUUUCUGACUGCAGCCGGAAAAGCGAGGAAAUGCUGCUC---
.......(((((........----------...)))))...........((..(((((((...((......))..((((((((((........)))))))))).)))))))..))..--- ( -24.70)
>DroSec_CAF1 3754 107 - 1
UUUUUACACAGGACCUCCAG----------UCCCCUGUCCCCCAAUUCUGCCACAUUUUCCCCGUCUUUUCGCUACGCUUUUCUGACUGCAGCCGGAAAAGGGAGGAAAUGCUGCUC---
.....(((..((((.....)----------)))..)))...........((..((((((((((...((((((((..((..........)))).)))))).))).)))))))..))..--- ( -25.10)
>DroSim_CAF1 5421 110 - 1
UUUUUACACAGGACCUCCAG----------UCCCCUGUCCCCCCAUUCUGCCACAUUUUCCCCGUCUUUUCGCUACGCUUUUCUGACUGCAGCCGGAAAAGCGAGGAAAUGCUGCUCCUC
.....(((..((((.....)----------)))..)))...........((..(((((((..((......))...((((((((((........)))))))))).)))))))..))..... ( -26.60)
>DroEre_CAF1 5162 115 - 1
UUUUUACACAGGACCUCCUGCAGCCCCGCACCCCCUGUCCCCC-AUUCCGCCACAUUUUCCCC-UCUUUUUGCUUCGCUUUUCUCGUUGCAGCCGGAAAAGCGAGGAAAUGCUGCUG---
.........(((....)))(((((...(((.....))).....-...................-........((((((((((((.((....)).))))))))))))....)))))..--- ( -27.80)
>DroYak_CAF1 2930 116 - 1
UUUUUACACAGGACCUCAUGCAUCCCCGAACCCCCUGUCUCCUAAUUCAGCCACAUUUUCCCC-UCAUUUUGCUUCACUUUUCUGGCUGCAGCCGGAAAAGCGAGGAAAUGCUGCUC---
.......(((((.....................)))))..........(((..(((((((...-..........((.((((((((((....)))))))))).)))))))))..))).--- ( -26.41)
>consensus
UUUUUACACAGGACCUCCAG__________UCCCCUGUCCCCCAAUUCUGCCACAUUUUCCCCGUCUUUUUGCUACGCUUUUCUGACUGCAGCCGGAAAAGCGAGGAAAUGCUGCUC___
.......(((((.....................)))))...........((..(((((((..((......))...((((((((((........)))))))))).)))))))..))..... (-19.16 = -20.08 +   0.92)

alignment

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secondary structure

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dotplot

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Window 7

Location 20,141,907 – 20,142,017
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.88
Mean single sequence MFE -34.61
Consensus MFE -25.93
Energy contribution -26.69
Covariance contribution 0.76
Combinations/Pair 1.09
Mean z-score -1.58
Structure conservation index 0.75
SVM decision value 0.06
SVM RNA-class probability 0.564666
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20141907 110 + 22407834
AAGCGUAGCAAAAAGACGGGGAAAAUGUGGCAGAAUUGGGGGACAGGGAA----------CUGGAGGUCCUGUGUAAAAAUUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCA
..((...((....((((((((........(((.((((...(.((((((..----------.......)))))).)...)))).))).)))))))).))...((((((....)))))))). ( -31.20)
>DroSec_CAF1 3791 110 + 1
AAGCGUAGCGAAAAGACGGGGAAAAUGUGGCAGAAUUGGGGGACAGGGGA----------CUGGAGGUCCUGUGUAAAAAUUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCA
..(((((((((.(((((............(((.((((.....(((.((((----------(.....))))).)))...)))).)))(((......))))))))....)))))))...)). ( -36.80)
>DroSim_CAF1 5461 110 + 1
AAGCGUAGCGAAAAGACGGGGAAAAUGUGGCAGAAUGGGGGGACAGGGGA----------CUGGAGGUCCUGUGUAAAAAUUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCA
..(((((((((.(((((............(((.(((......(((.((((----------(.....))))).)))....))).)))(((......))))))))....)))))))...)). ( -35.70)
>DroEre_CAF1 5199 118 + 1
AAGCGAAGCAAAAAGA-GGGGAAAAUGUGGCGGAAU-GGGGGACAGGGGGUGCGGGGCUGCAGGAGGUCCUGUGUAAAAAUUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCA
.(((((.(((......-........)))(.((((((-(..((((((((.((((((((((......))))))))...........)).))))))))..))))))).).)))))........ ( -36.04)
>DroYak_CAF1 2967 119 + 1
AAGUGAAGCAAAAUGA-GGGGAAAAUGUGGCUGAAUUAGGAGACAGGGGGUUCGGGGAUGCAUGAGGUCCUGUGUAAAAAUUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCA
.......((.(((..(-(((((..(((((.(((((((.(....)....)))))))...)))))....))).(((((.....))))).)))..))).))((((.((((....)))))))). ( -33.30)
>consensus
AAGCGUAGCAAAAAGACGGGGAAAAUGUGGCAGAAUUGGGGGACAGGGGA__________CUGGAGGUCCUGUGUAAAAAUUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCA
..((...((....((((((((........(((.((((...(.((((((...................)))))).)...)))).))).)))))))).))...((((((....)))))))). (-25.93 = -26.69 +   0.76)

alignment

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secondary structure

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Window 8

Location 20,141,907 – 20,142,017
Length 110
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.88
Mean single sequence MFE -22.42
Consensus MFE -19.28
Energy contribution -20.08
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 0.86
SVM decision value 0.34
SVM RNA-class probability 0.695066
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20141907 110 - 22407834
UGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAAUUUUUACACAGGACCUCCAG----------UUCCCUGUCCCCCAAUUCUGCCACAUUUUCCCCGUCUUUUUGCUACGCUU
.((.((((((.((((.......(((......)))(((.((((.....(((((........----------...))))).....)))).)))...........))))...)))))).)).. ( -23.90)
>DroSec_CAF1 3791 110 - 1
UGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAAUUUUUACACAGGACCUCCAG----------UCCCCUGUCCCCCAAUUCUGCCACAUUUUCCCCGUCUUUUCGCUACGCUU
.((((((((....))))))...(((......)))(((.((((...(((..((((.....)----------)))..))).....)))).)))....................))....... ( -22.70)
>DroSim_CAF1 5461 110 - 1
UGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAAUUUUUACACAGGACCUCCAG----------UCCCCUGUCCCCCCAUUCUGCCACAUUUUCCCCGUCUUUUCGCUACGCUU
.((.((((((.((((......((((......))))..........(((..((((.....)----------)))..))).....)))))))))).........((......))....)).. ( -24.10)
>DroEre_CAF1 5199 118 - 1
UGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAAUUUUUACACAGGACCUCCUGCAGCCCCGCACCCCCUGUCCCCC-AUUCCGCCACAUUUUCCCC-UCUUUUUGCUUCGCUU
........(((((.((.((((((((......))))............(((((......(((......)))...))))).....-...................-..)))).)).))))). ( -22.30)
>DroYak_CAF1 2967 119 - 1
UGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAAUUUUUACACAGGACCUCAUGCAUCCCCGAACCCCCUGUCUCCUAAUUCAGCCACAUUUUCCCC-UCAUUUUGCUUCACUU
.((((((((....))))))...(((......)))((..((((.....(((((.....................))))).....))))..))............-.......))....... ( -19.10)
>consensus
UGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAAUUUUUACACAGGACCUCCAG__________UCCCCUGUCCCCCAAUUCUGCCACAUUUUCCCCGUCUUUUUGCUACGCUU
.((((((((....))))))...(((......)))(((.((((.....(((((.....................))))).....)))).)))....................))....... (-19.28 = -20.08 +   0.80)

alignment

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secondary structure

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dotplot

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Window 9

Location 20,141,947 – 20,142,057
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.45
Mean single sequence MFE -36.14
Consensus MFE -30.98
Energy contribution -31.06
Covariance contribution 0.08
Combinations/Pair 1.06
Mean z-score -1.68
Structure conservation index 0.86
SVM decision value 1.25
SVM RNA-class probability 0.936489
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20141947 110 + 22407834
GGACAGGGAA----------CUGGAGGUCCUGUGUAAAAAUUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCAAAAUACACACGGCAGAUGAUUAUGAGAUCACUUUGUGUAU
..((((((..----------......(((.((((((........(((((......)))))(((((((....))))))).....)))))).)))...(((((....))))))))))).... ( -33.00)
>DroSec_CAF1 3831 110 + 1
GGACAGGGGA----------CUGGAGGUCCUGUGUAAAAAUUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCAAAAUACACACGGCAGAUGAUUAUGAGAUCACUUUGUGUGU
..(((.((((----------(.....))))).)))....(((.((((((......)))...((((((....))))))))).)))((((((((.((.(((((....))))))))))))))) ( -39.60)
>DroSim_CAF1 5501 110 + 1
GGACAGGGGA----------CUGGAGGUCCUGUGUAAAAAUUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCAAAAUACACACGGCAGAUGAUUAUGAGAUCACUUUGUGUAU
..(((.((((----------(.....))))).)))....(((.((((((......)))...((((((....))))))))).)))..((((((.((.(((((....))))))))))))).. ( -36.10)
>DroEre_CAF1 5237 120 + 1
GGACAGGGGGUGCGGGGCUGCAGGAGGUCCUGUGUAAAAAUUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCAAAAUACAUACGGCAGAUGAUUAUGAGAUCACUUUUUGUAU
..(((((((((((((((((......))))))(((((........(((((......)))))(((((((....))))))).....)))))...))....((((....))))))))))))).. ( -36.90)
>DroYak_CAF1 3006 120 + 1
AGACAGGGGGUUCGGGGAUGCAUGAGGUCCUGUGUAAAAAUUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCAAAAUACACACGGCAGAUGAUUAUGAGAUCACUUUUUGUAU
..(((((((((((...(((.(((...(((.((((((........(((((......)))))(((((((....))))))).....)))))).)))..))))))....))..))))))))).. ( -35.10)
>consensus
GGACAGGGGA__________CUGGAGGUCCUGUGUAAAAAUUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCAAAAUACACACGGCAGAUGAUUAUGAGAUCACUUUGUGUAU
(.((((((..................(((.((((((........(((((......)))))(((((((....))))))).....)))))).)))...(((((....))))))))))).).. (-30.98 = -31.06 +   0.08)

alignment

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secondary structure

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dotplot

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Window 0

Location 20,141,947 – 20,142,057
Length 110
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.45
Mean single sequence MFE -28.48
Consensus MFE -25.20
Energy contribution -25.80
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.08
Structure conservation index 0.88
SVM decision value 2.63
SVM RNA-class probability 0.995890
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20141947 110 - 22407834
AUACACAAAGUGAUCUCAUAAUCAUCUGCCGUGUGUAUUUUGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAAUUUUUACACAGGACCUCCAG----------UUCCCUGUCC
(((((((.((((((......)))).))....)))))))..(((((((((....))))))...(((......))))))..........(((((........----------...))))).. ( -28.70)
>DroSec_CAF1 3831 110 - 1
ACACACAAAGUGAUCUCAUAAUCAUCUGCCGUGUGUAUUUUGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAAUUUUUACACAGGACCUCCAG----------UCCCCUGUCC
((((((..((((((......)))).))...))))))....(((((((((....))))))...(((......))))))........(((..((((.....)----------)))..))).. ( -31.00)
>DroSim_CAF1 5501 110 - 1
AUACACAAAGUGAUCUCAUAAUCAUCUGCCGUGUGUAUUUUGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAAUUUUUACACAGGACCUCCAG----------UCCCCUGUCC
(((((((.((((((......)))).))....)))))))..(((((((((....))))))...(((......))))))........(((..((((.....)----------)))..))).. ( -30.00)
>DroEre_CAF1 5237 120 - 1
AUACAAAAAGUGAUCUCAUAAUCAUCUGCCGUAUGUAUUUUGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAAUUUUUACACAGGACCUCCUGCAGCCCCGCACCCCCUGUCC
.........(((((......))))).(((.(((...(((.(((((((((....))))))...(((......)))))).)))...))).((((....)))).......))).......... ( -27.60)
>DroYak_CAF1 3006 120 - 1
AUACAAAAAGUGAUCUCAUAAUCAUCUGCCGUGUGUAUUUUGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAAUUUUUACACAGGACCUCAUGCAUCCCCGAACCCCCUGUCU
.........(((((......)))))...(((((((.(((.(((((((((....))))))...(((......)))))).)))...))))).))............................ ( -25.10)
>consensus
AUACACAAAGUGAUCUCAUAAUCAUCUGCCGUGUGUAUUUUGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAAUUUUUACACAGGACCUCCAG__________UCCCCUGUCC
(((((((.((((((......)))).))....)))))))..(((((((((....))))))...(((......))))))..........(((((.....................))))).. (-25.20 = -25.80 +   0.60)

alignment

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secondary structure

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dotplot

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Window 1

Location 20,141,977 – 20,142,097
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.17
Mean single sequence MFE -33.93
Consensus MFE -28.00
Energy contribution -28.64
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.79
Structure conservation index 0.83
SVM decision value 0.94
SVM RNA-class probability 0.886243
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20141977 120 + 22407834
UUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCAAAAUACACACGGCAGAUGAUUAUGAGAUCACUUUGUGUAUGACUUGCUGCGAAAGCAGAUCCUUUUACCUUAAAUCCUCA
....(((((......))))).((((((....))))))((((.(((((((.((....(((((....))))))).)))))))...))))(((....)))....................... ( -34.40)
>DroSec_CAF1 3861 120 + 1
UUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCAAAAUACACACGGCAGAUGAUUAUGAGAUCACUUUGUGUGUGACUUGCUGCGAAAGCAGAUCCUUUUACCUUAACUCCUCA
....(((((......))))).((((((....))))))((((..(((((((((.((.(((((....))))))))))))))))..))))(((....)))....................... ( -39.20)
>DroSim_CAF1 5531 120 + 1
UUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCAAAAUACACACGGCAGAUGAUUAUGAGAUCACUUUGUGUAUGACUUGCUGCGAAAGCAGAUCCUUUUACCUUAACUCCUCA
....(((((......))))).((((((....))))))((((.(((((((.((....(((((....))))))).)))))))...))))(((....)))....................... ( -34.40)
>DroEre_CAF1 5277 120 + 1
UUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCAAAAUACAUACGGCAGAUGAUUAUGAGAUCACUUUUUGUAUGACUUGCUGGAAGAGCAGAUCCUUUUACCUUAGCUCCUCA
....(((((......)))))..(((((....)))))(((((....(((((((.((.(((((....))))).)).)))))))..))))).((.((((................)))).)). ( -32.39)
>DroYak_CAF1 3046 120 + 1
UUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCAAAAUACACACGGCAGAUGAUUAUGAGAUCACUUUUUGUAUGACUGGCUGGAAGAGCAGAUCCUUUUACCUUAGCUCUAUA
....(((((......)))))((..(((((((((((...............))))).))))((..(((.....)))..))......))..))(((((................)))))... ( -29.25)
>consensus
UUAUGCGCCUUGUUUGGCGUUUUGGCAUCGCUGCCAAGCAAAAUACACACGGCAGAUGAUUAUGAGAUCACUUUGUGUAUGACUUGCUGCGAAAGCAGAUCCUUUUACCUUAACUCCUCA
...((((((......)))...((((((....)))))))))..(((((((.((....(((((....))))))).)))))))......((((....))))...................... (-28.00 = -28.64 +   0.64)

alignment

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secondary structure

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dotplot

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Window 2

Location 20,141,977 – 20,142,097
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.17
Mean single sequence MFE -33.06
Consensus MFE -29.28
Energy contribution -29.48
Covariance contribution 0.20
Combinations/Pair 1.11
Mean z-score -1.82
Structure conservation index 0.89
SVM decision value 1.96
SVM RNA-class probability 0.983866
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20141977 120 - 22407834
UGAGGAUUUAAGGUAAAAGGAUCUGCUUUCGCAGCAAGUCAUACACAAAGUGAUCUCAUAAUCAUCUGCCGUGUGUAUUUUGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAA
..........((((((((.((..((((.....))))..)).((((((.((((((......)))).))....))))))))))))))((((....))))....((((......))))..... ( -32.20)
>DroSec_CAF1 3861 120 - 1
UGAGGAGUUAAGGUAAAAGGAUCUGCUUUCGCAGCAAGUCACACACAAAGUGAUCUCAUAAUCAUCUGCCGUGUGUAUUUUGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAA
......((.((((((........)))))).)).(((((..((((((..((((((......)))).))...))))))..)))))((((((....))))))..((((......))))..... ( -35.00)
>DroSim_CAF1 5531 120 - 1
UGAGGAGUUAAGGUAAAAGGAUCUGCUUUCGCAGCAAGUCAUACACAAAGUGAUCUCAUAAUCAUCUGCCGUGUGUAUUUUGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAA
......((.((((((........)))))).)).(((((..((((((..((((((......)))).))...))))))..)))))((((((....))))))..((((......))))..... ( -33.10)
>DroEre_CAF1 5277 120 - 1
UGAGGAGCUAAGGUAAAAGGAUCUGCUCUUCCAGCAAGUCAUACAAAAAGUGAUCUCAUAAUCAUCUGCCGUAUGUAUUUUGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAA
.(((((((..((((......)))))))))))..(((((.(((((...(..((((......))))..)...)))))...)))))((((((....))))))..((((......))))..... ( -36.20)
>DroYak_CAF1 3046 120 - 1
UAUAGAGCUAAGGUAAAAGGAUCUGCUCUUCCAGCCAGUCAUACAAAAAGUGAUCUCAUAAUCAUCUGCCGUGUGUAUUUUGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAA
...(((((..((((......)))))))))....((.((..(((((...((((((......)))).))....)))))..)).))((((((....))))))..((((......))))..... ( -28.80)
>consensus
UGAGGAGUUAAGGUAAAAGGAUCUGCUUUCGCAGCAAGUCAUACACAAAGUGAUCUCAUAAUCAUCUGCCGUGUGUAUUUUGCUUGGCAGCGAUGCCAAAACGCCAAACAAGGCGCAUAA
...(((((..((((......)))))))))....(((((..((((((..((((((......)))).))...))))))..)))))((((((....))))))..((((......))))..... (-29.28 = -29.48 +   0.20)

alignment

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secondary structure

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dotplot

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Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:41 2006