Locus 7190

Sequence ID 2L_DroMel_CAF1
Location 20,141,089 – 20,141,209
Length 120
Max. P 0.842303
window11474

overview

Window 4

Location 20,141,089 – 20,141,209
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.67
Mean single sequence MFE -33.70
Consensus MFE -32.78
Energy contribution -32.78
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 0.97
SVM decision value 0.76
SVM RNA-class probability 0.842303
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20141089 120 - 22407834
GGUCUCAAUAAUUACAGCAGCAUUGGGCGCCAUUAUGCUGCAUAGUUAAACACACAACUGGCUUAAGUAAUUAGAAGUCGAUUACACAGACCGCGGGCGGCAUUUAUGCUGACUGAAGCU
(((((...(((((((.(((((((..(....)...))))))).(((((........)))))......)))))))...((.....))..))))).(((.(((((....))))).)))..... ( -32.90)
>DroSec_CAF1 2974 120 - 1
GGUCUCAAUAAUUACAGCAGCAUUGGGCGCCAUUAUGCUGCAUAGUUAAACACACAACUGGCUUAAGUAAUUAGAAGUCGAUUACACAGACCGCGGGCGGCAUUUAUGCUGACUGGAGCU
(((((...(((((((.(((((((..(....)...))))))).(((((........)))))......)))))))...((.....))..))))).(((.(((((....))))).)))..... ( -33.10)
>DroSim_CAF1 4642 120 - 1
GGUCUCAAUAAUUACAGCAGCAUUGGGCGCCAUUAUGCUGCAUAGUUAAACACACAACUGGCUUAAGUAAUUAGAAGUCGAUUACACAGACCGCGGGCGGCAUUUAUGCUGACUGGAGCU
(((((...(((((((.(((((((..(....)...))))))).(((((........)))))......)))))))...((.....))..))))).(((.(((((....))))).)))..... ( -33.10)
>DroEre_CAF1 4400 120 - 1
GGUCUCAAUAAUUACAGCAGCAUUGGCCGCCAUUAUGCUGCAUAGUUAAACACACAACUGGCUUAAGUAAUUAGAAGUCGAUUACACAGACCGCGGGCGGCAUUUAUGCUGACUGAAGCU
..............(((((((((..((((((......(((..(((((........)))))......((((((.......)))))).)))......))))))....)))))).)))..... ( -34.70)
>DroYak_CAF1 2148 120 - 1
GGUCUCAAUAAUUACAGCAGCAUUGGCCGCCAUUAUGCUGCAUAGUUAAACUCACAACUGGCUUAAGUAAUUAGAAGUCGAUUACACAGACCGCGGGCGGCAUUUAUGCUGACUGAAGCU
..............(((((((((..((((((......(((..(((((........)))))......((((((.......)))))).)))......))))))....)))))).)))..... ( -34.70)
>consensus
GGUCUCAAUAAUUACAGCAGCAUUGGGCGCCAUUAUGCUGCAUAGUUAAACACACAACUGGCUUAAGUAAUUAGAAGUCGAUUACACAGACCGCGGGCGGCAUUUAUGCUGACUGAAGCU
(((((...(((((((.((((((((((...)))..))))))).(((((........)))))......)))))))...((.....))..))))).(((.(((((....))))).)))..... (-32.78 = -32.78 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:34 2006