Locus 719

Sequence ID 2L_DroMel_CAF1
Location 2,091,394 – 2,091,485
Length 91
Max. P 0.999375
window1178 window1179

overview

Window 8

Location 2,091,394 – 2,091,485
Length 91
Sequences 5
Columns 93
Reading direction forward
Mean pairwise identity 96.12
Mean single sequence MFE -29.68
Consensus MFE -26.16
Energy contribution -25.96
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -2.78
Structure conservation index 0.88
SVM decision value 3.55
SVM RNA-class probability 0.999375
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2091394 91 + 22407834
-GAACCUUGAACUAGUGGCAAAUUGCUAACAAGGUCGCCAAAGUUUCCACAGGUGGUGACUUUAAUUGGCAGGGGCCUUCAAUCA-AGUCAAC
-....(((((......(((...(((((((.((((((((((..((....))...))))))))))..)))))))..))).....)))-))..... ( -29.80)
>DroSec_CAF1 108416 93 + 1
AGAACCUUGAACUAGUGGCAAAUUGCUAACAAGGUCGCCAAAGUUUCCACAGGUGGCGACUUUAAUUGGCAGGGGCCUUCAAUCAAAGCCAAC
......((((......(((...(((((((.((((((((((..((....))...))))))))))..)))))))..))).....))))....... ( -29.10)
>DroSim_CAF1 108263 93 + 1
AGAACCUUGAACUAGUGGCAAAUUGCUAACAAGGUCGCCAAAGUUUCCACAGGUGGCGACUUUAAUUGGCAGGGGCCUUCAAUCAAAGCCAAC
......((((......(((...(((((((.((((((((((..((....))...))))))))))..)))))))..))).....))))....... ( -29.10)
>DroEre_CAF1 111074 92 + 1
AGAACCUUGAACUAGUGGCAAAUUGCUAACAAGGUCGCCAAAGUUUCCACAGGUGGCGACUUUAAUUGGCAGGGCCCUUCAAUCA-AGCCAAC
.....(((((...((.(((...(((((((.((((((((((..((....))...))))))))))..))))))).)))))....)))-))..... ( -32.40)
>DroYak_CAF1 112968 92 + 1
AGAACCUUGAACUAGUGGCAAAUUGCUAACAAGGUCGCCAAAGUUUCCACAGGUGGUGACUUUAAUUGGCGGCUGCCUUCAAUCA-AGCCAAC
.((.(((((...(((..(....)..))).)))))))(((((((((.(((....))).))))....)))))((((...........-))))... ( -28.00)
>consensus
AGAACCUUGAACUAGUGGCAAAUUGCUAACAAGGUCGCCAAAGUUUCCACAGGUGGCGACUUUAAUUGGCAGGGGCCUUCAAUCA_AGCCAAC
......(((((.....(((...(((((((.((((((((((..((....))...))))))))))..)))))))..))))))))........... (-26.16 = -25.96 +  -0.20) 

alignment

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secondary structure

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dotplot

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Window 9

Location 2,091,394 – 2,091,485
Length 91
Sequences 5
Columns 93
Reading direction reverse
Mean pairwise identity 96.12
Mean single sequence MFE -27.32
Consensus MFE -24.56
Energy contribution -24.36
Covariance contribution -0.20
Combinations/Pair 1.06
Mean z-score -1.68
Structure conservation index 0.90
SVM decision value 1.63
SVM RNA-class probability 0.968487
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2091394 91 - 22407834
GUUGACU-UGAUUGAAGGCCCCUGCCAAUUAAAGUCACCACCUGUGGAAACUUUGGCGACCUUGUUAGCAAUUUGCCACUAGUUCAAGGUUC-
(.(((((-((((((.((....))..))))).)))))).)((((...(((.((.((((((..(((....))).))))))..))))).))))..- ( -25.60)
>DroSec_CAF1 108416 93 - 1
GUUGGCUUUGAUUGAAGGCCCCUGCCAAUUAAAGUCGCCACCUGUGGAAACUUUGGCGACCUUGUUAGCAAUUUGCCACUAGUUCAAGGUUCU
...(((((((((((.((....))..)))))))))))((((...((....))..))))(((((((((((..........))))..))))))).. ( -29.10)
>DroSim_CAF1 108263 93 - 1
GUUGGCUUUGAUUGAAGGCCCCUGCCAAUUAAAGUCGCCACCUGUGGAAACUUUGGCGACCUUGUUAGCAAUUUGCCACUAGUUCAAGGUUCU
...(((((((((((.((....))..)))))))))))((((...((....))..))))(((((((((((..........))))..))))))).. ( -29.10)
>DroEre_CAF1 111074 92 - 1
GUUGGCU-UGAUUGAAGGGCCCUGCCAAUUAAAGUCGCCACCUGUGGAAACUUUGGCGACCUUGUUAGCAAUUUGCCACUAGUUCAAGGUUCU
.....((-(((......(((..(((.(((....(((((((...((....))..)))))))...))).)))....)))......)))))..... ( -27.40)
>DroYak_CAF1 112968 92 - 1
GUUGGCU-UGAUUGAAGGCAGCCGCCAAUUAAAGUCACCACCUGUGGAAACUUUGGCGACCUUGUUAGCAAUUUGCCACUAGUUCAAGGUUCU
..((((.-.(((((..(((((.((((((....(((..(((....)))..)))))))))...)))))..))))).))))............... ( -25.40)
>consensus
GUUGGCU_UGAUUGAAGGCCCCUGCCAAUUAAAGUCGCCACCUGUGGAAACUUUGGCGACCUUGUUAGCAAUUUGCCACUAGUUCAAGGUUCU
(.(((((.((((((.((....))..)))))).))))).)((((...(((.((.((((((..(((....))).))))))..))))).))))... (-24.56 = -24.36 +  -0.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:47 2006