Locus 7189

Sequence ID 2L_DroMel_CAF1
Location 20,138,819 – 20,138,922
Length 103
Max. P 0.540861
window11473

overview

Window 3

Location 20,138,819 – 20,138,922
Length 103
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 84.72
Mean single sequence MFE -25.07
Consensus MFE -20.94
Energy contribution -20.83
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -1.49
Structure conservation index 0.84
SVM decision value 0.01
SVM RNA-class probability 0.540861
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20138819 103 + 22407834
-----------------AUGUAAAUAUAAAGGACACACACCCACAUCCUCACAGUAUAUUUAAUCAUAAUGCCCGAUGCGAUGAUGUCAUACUGGUGGUAUCAGCACUUGGGGAGCUCUA
-----------------...((((((((.((((............)))).....)))))))).......(.((((((((..((((..(((....)))..))))))).))))).)...... ( -22.00)
>DroSec_CAF1 726 120 + 1
UGUUUAAAUAAAUACGAAUGUAAAUAUAAAGGACACACACACACAUCCUCGCAGCAUAUUUAAUCAUAAUGCCCGAUGCGAUGAUGUCACACUCGUGGCAUCAGCACUUGGGGAACUCCA
.((((..........((...(((((((..((((............))))......))))))).))......((((((((..(((((((((....)))))))))))).))))))))).... ( -27.30)
>DroSim_CAF1 2382 120 + 1
UGUAUAAAUAAAUACGAAUGUAAAUAUACAGGACACACACCCACAUCCUCGCAGCAUAUUUAAUCAUAAUGCCCGAUGCGAUGAUGUCACACUCGUGGCAUCAGCACUUGGAGAACUCCA
.((((......))))...((((....))))(((.......(((.....(((((((((...........))))....)))))(((((((((....))))))))).....))).....))). ( -25.90)
>consensus
UGU_UAAAUAAAUACGAAUGUAAAUAUAAAGGACACACACCCACAUCCUCGCAGCAUAUUUAAUCAUAAUGCCCGAUGCGAUGAUGUCACACUCGUGGCAUCAGCACUUGGGGAACUCCA
....................(((((((..((((............))))......))))))).........((((((((..(((((((((....)))))))))))).)))))........ (-20.94 = -20.83 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:33 2006