Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,136,231 – 20,136,345 |
Length | 114 |
Max. P | 0.680950 |
Location | 20,136,231 – 20,136,345 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.87 |
Mean single sequence MFE | -31.62 |
Consensus MFE | -13.46 |
Energy contribution | -16.22 |
Covariance contribution | 2.76 |
Combinations/Pair | 1.10 |
Mean z-score | -2.06 |
Structure conservation index | 0.43 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.680950 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20136231 114 + 22407834 UCAGGCCGAAAAUGCAAUCGAUAGUUGCUCCAGGGAAGUUCUUUCCUGAUUGGC--GGAAUCGUAAAUU----AGUUCUAGUGAGUGGAAAAGCAACUUUUCUCUCAUUCAAAGCCAUUA ...(((.(((........((((..(((((.(((((((....)))))))...)))--)).))))......----..))).((((((.(((((((...)))))))))))))....))).... ( -31.19) >DroSec_CAF1 47517 114 + 1 UCAGGCCGAAAAUGCAAUCGAUAGUUGCUCCAGGGAAGUUCUUCCCUGAUUGGC--GGAAUCGUAAAUU----AGUUCUAGUGAGUGGAAAGGCAACUUUUCUCUCAUUCAAAGCCAUUA ...(((.(((........((((..(((((.(((((((....)))))))...)))--)).))))......----..))).((((((.((((((....)))))).))))))....))).... ( -39.09) >DroAna_CAF1 8131 104 + 1 AAAGGCC-AAGCUCGAAUCGAUUGUUGCUCCAGGGCAGCU-------GAGAGUCUGUGAAUAGAAAACGUGGAGGUUAUA----AUGGAAAUUCUUCUUGUU--UUUUGCAAA--CAUUA ..((((.-...((((........((((((....)))))))-------))).))))((...(((((((((.(((((.....----........))))).))))--)))))...)--).... ( -22.32) >DroEre_CAF1 23709 114 + 1 UUAAGCAGAAAAUGCAAUCGAUAGUUGCUCCAGGGAAGUUCUUCCCUGAUUGGC--GGAAUGGCAAAUU----AGUUUUAGUGAGUGGAAAAGCAACUUUUCUCUCAUUCAAAGCCAUUA ....((.......(((((.....)))))..(((((((....)))))))....))--..((((((.....----..(((.((((((.(((((((...))))))))))))).))))))))). ( -33.41) >DroYak_CAF1 6159 114 + 1 UUAAGUGGAAAACGCAAUCGAUAGUUGCUCCAGGGAAGUUCUUCCCUGAUUGGC--GGAAUGGUAAAUU----AGUUUUAGUGAGUGGAAAAGCAACUUUUCUCUCAUUCAAAGCCAUUA ...(((((((((((((((.....)))))..(((((((....)))))))......--.............----.)))))((((((.(((((((...))))))))))))).....))))). ( -32.10) >consensus UCAGGCCGAAAAUGCAAUCGAUAGUUGCUCCAGGGAAGUUCUUCCCUGAUUGGC__GGAAUCGUAAAUU____AGUUCUAGUGAGUGGAAAAGCAACUUUUCUCUCAUUCAAAGCCAUUA .............(((((.....)))))..(((((((....)))))))...(((...((((....(((......))).....(((.(((((......))))).)))))))...))).... (-13.46 = -16.22 + 2.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:31 2006