Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,132,019 – 20,132,114 |
Length | 95 |
Max. P | 0.537385 |
Location | 20,132,019 – 20,132,114 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.02 |
Mean single sequence MFE | -21.10 |
Consensus MFE | -10.54 |
Energy contribution | -11.60 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.05 |
Mean z-score | -1.69 |
Structure conservation index | 0.50 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537385 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20132019 95 + 22407834 AUAGAAAUGUAGCUACGUUUCAGAGUAAUUAAAUAAAAAUGCUCCGGGUGUAAAAAAUCUAAUGCAGUAUGUUAAUACAUUAGAUCUGAA---UGUAU---------------------- (((....)))...((((((.((((.((((..........(((...((((.......))))...)))((((....))))))))..))))))---)))).---------------------- ( -15.90) >DroSec_CAF1 43277 94 + 1 ----AAAUGAAGCUUCGUUUCAGAGUAAUUAAAUAAAAAUGCUCCGGGUGUAAAAAAUCUAGUGCGGCAUGUUUAUAAAUUAGAUCUGUAUAGUAUAU---------------------- ----...((((((...))))))(((((.((......)).))))).((((.......)))).((((.(((.(((((.....))))).)))...))))..---------------------- ( -14.90) >DroEre_CAF1 19972 95 + 1 AUAGAAAUGGAGCUACGUUUCAGAGUAAUUAAAUGAAAAUGCUCCGGGGCCUAA------AAUAUGGCAUGUUUAUACUUUAGAUGUGUA---UACAUAUUAUU---------------- .......((((((....(((((...........)))))..))))))..(((...------.....)))((((.(((((.......)))))---.))))......---------------- ( -23.30) >DroYak_CAF1 2241 115 + 1 AUAGAAAUGGAGCUGCGUUUCAGAGUAAUUAAA--AAAAUGCUCCGAGGGCUAAAUAUGUAAUAUGGCAUGUUUAUACAUUAGAUGUGUU---UACAUUACAUUAAGUCCGUUUUAUAUU ((((((.((((((....(((..((....))..)--))...)))))).(((((....(((((((..((((((((((.....))))))))))---...)))))))..))))).))))))... ( -30.30) >consensus AUAGAAAUGGAGCUACGUUUCAGAGUAAUUAAAUAAAAAUGCUCCGGGGGCAAAAAAUCUAAUACGGCAUGUUUAUACAUUAGAUCUGUA___UACAU______________________ ...((((((......)))))).(((((.((......)).)))))......................(((((((((.....)))))))))............................... (-10.54 = -11.60 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:28 2006