Locus 7184

Sequence ID 2L_DroMel_CAF1
Location 20,131,385 – 20,131,499
Length 114
Max. P 0.680596
window11466

overview

Window 6

Location 20,131,385 – 20,131,499
Length 114
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 82.84
Mean single sequence MFE -24.82
Consensus MFE -16.62
Energy contribution -17.87
Covariance contribution 1.25
Combinations/Pair 1.15
Mean z-score -1.77
Structure conservation index 0.67
SVM decision value 0.30
SVM RNA-class probability 0.680596
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20131385 114 + 22407834
CACCACAUUUGCCGCUUAACAGGGGUUAAGCUAAAAAAAAAAAAGGAAGUCAGGUUCCCCAGUUUUUUUCC------CCCUGCUUUGUCUAUCUGGCUGCAACUCGUUAAGCCACUCAAC
.............(((((((.((((........(((((((....((((......))))....)))))))))------)).(((...(((.....))).)))....)))))))........ ( -24.90)
>DroSec_CAF1 42679 104 + 1
CACCACAUUUGCCGCUUAACAGGGUCUCAGCUAAA------AAAGGAAGUCAGAUUCCCCAGUUUUU----------CCCUUUUUUGUCUCUCUGGCUGCAACUCGUUAAGCCACUCAAC
.............(((((((.((((..(((((...------..((..((.((((.............----------......)))).))..)))))))..)))))))))))........ ( -23.41)
>DroEre_CAF1 19347 114 + 1
CACCACAUUUGCCGCUUAACAGGGGCUCAGCUGAA------AAACGAAGACAGAUUUCCCACUUUUUUCCCCAUUUUCCCCUUUUUGUCUGUUUGGCUGCAGUUCGUUAAGCCACUCAAC
.............(((((((..(((((((((..((------......(((((((.............................))))))).))..)))).))))))))))))........ ( -26.55)
>DroYak_CAF1 1606 104 + 1
CACCACAUUUGCCGCUUAACAGGGGCUCAGCUAAA------AAACGAAGACAGAUUCCCCAGUUUUUUC----------CCUUUUUGUCUGUUUUGCUGCAGUUCGUUAAGCCACUCAAC
.............(((((((..(((((((((...(------((((..(((((((...............----------....)))))))))))))))).))))))))))))........ ( -24.41)
>consensus
CACCACAUUUGCCGCUUAACAGGGGCUCAGCUAAA______AAACGAAGACAGAUUCCCCAGUUUUUUC________CCCCUUUUUGUCUGUCUGGCUGCAACUCGUUAAGCCACUCAAC
.............(((((((..(((((((((((((............(((((((.............................))))))).)))))))).))))))))))))........ (-16.62 = -17.87 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:27 2006